Literature DB >> 28125789

Codon Clarity or Conundrum?

Daniel P Aalberts1, Gregory Boël2, John F Hunt3.   

Abstract

Synonymous variations in protein-coding sequences alter protein expression dynamics, which has important implications for cellular physiology and evolutionary fitness, but disentangling the underlying molecular mechanisms remains challenging.
Copyright © 2017 Elsevier Inc. All rights reserved.

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Year:  2017        PMID： 28125789      PMCID： PMC5318996          DOI： 10.1016/j.cels.2017.01.004

Source DB:  PubMed          Journal:  Cell Syst        ISSN： 2405-4712            Impact factor:   10.304


  12 in total

1.  An evolutionarily conserved mechanism for controlling the efficiency of protein translation.

Authors:  Tamir Tuller; Asaf Carmi; Kalin Vestsigian; Sivan Navon; Yuval Dorfan; John Zaborske; Tao Pan; Orna Dahan; Itay Furman; Yitzhak Pilpel
Journal:  Cell       Date:  2010-04-16       Impact factor: 41.582

2.  Causes and effects of N-terminal codon bias in bacterial genes.

Authors:  Daniel B Goodman; George M Church; Sriram Kosuri
Journal:  Science       Date:  2013-09-26       Impact factor: 47.728

3.  Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes.

Authors:  G F Chen; M Inouye
Journal:  Nucleic Acids Res       Date:  1990-03-25       Impact factor: 16.971

4.  RNA codons and protein synthesis. 15. Dissimilar responses of mammalian and bacterial transfer RNA fractions to messenger RNA codons.

Authors:  C T Caskey; A Beaudet; M Nirenberg
Journal:  J Mol Biol       Date:  1968-10-14       Impact factor: 5.469

5.  RNA Structural Determinants of Optimal Codons Revealed by MAGE-Seq.

Authors:  Eric D Kelsic; Hattie Chung; Niv Cohen; Jimin Park; Harris H Wang; Roy Kishony
Journal:  Cell Syst       Date:  2016-12-21       Impact factor: 10.304

6.  Gene Architectures that Minimize Cost of Gene Expression.

Authors:  Idan Frumkin; Dvir Schirman; Aviv Rotman; Fangfei Li; Liron Zahavi; Ernest Mordret; Omer Asraf; Song Wu; Sasha F Levy; Yitzhak Pilpel
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

7.  Codon optimality is a major determinant of mRNA stability.

Authors:  Vladimir Presnyak; Najwa Alhusaini; Ying-Hsin Chen; Sophie Martin; Nathan Morris; Nicholas Kline; Sara Olson; David Weinberg; Kristian E Baker; Brenton R Graveley; Jeff Coller
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

8.  Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.

Authors:  Fuad Mohammad; Christopher J Woolstenhulme; Rachel Green; Allen R Buskirk
Journal:  Cell Rep       Date:  2016-01-14       Impact factor: 9.423

9.  Codon influence on protein expression in E. coli correlates with mRNA levels.

Authors:  Reka Letso; Helen Neely; W Nicholson Price; Grégory Boël; Kam-Ho Wong; Min Su; Jon Luff; Mayank Valecha; John K Everett; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Daniel P Aalberts; John F Hunt
Journal:  Nature       Date:  2016-01-13       Impact factor: 49.962

10.  Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.

Authors:  Amin Espah Borujeni; Anirudh S Channarasappa; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971
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  2 in total

1.  Can Protein Expression Be Regulated by Modulation of tRNA Modification Profiles?

Authors:  Leticia Pollo-Oliveira; Valérie de Crécy-Lagard
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  The new strategies to overcome challenges in protein production in bacteria.

Authors:  Anna Lipońska; Farès Ousalem; Daniel P Aalberts; John F Hunt; Grégory Boël
Journal:  Microb Biotechnol       Date:  2018-11-28       Impact factor: 5.813
  2 in total

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