Literature DB >> 28125318

In-silico prediction of concentration-dependent viscosity curves for monoclonal antibody solutions.

Dheeraj S Tomar1, Li Li2, Matthew P Broulidakis2, Nicholas G Luksha2, Christopher T Burns2, Satish K Singh1, Sandeep Kumar1.   

Abstract

Early stage developability assessments of monoclonal antibody (mAb) candidates can help reduce risks and costs associated with their product development. Forecasting viscosity of highly concentrated mAb solutions is an important aspect of such developability assessments. Reliable predictions of concentration-dependent viscosity behaviors for mAb solutions in platform formulations can help screen or optimize drug candidates for flexible manufacturing and drug delivery options. Here, we present a computational method to predict concentration-dependent viscosity curves for mAbs solely from their sequence-structural attributes. This method was developed using experimental data on 16 different mAbs whose concentration-dependent viscosity curves were experimentally obtained under standardized conditions. Each concentration-dependent viscosity curve was fitted with a straight line, via logarithmic manipulations, and the values for intercept and slope were obtained. Intercept, which relates to antibody diffusivity, was found to be nearly constant. In contrast, slope, the rate of increase in solution viscosity with solute concentration, varied significantly across different mAbs, demonstrating the importance of intermolecular interactions toward viscosity. Next, several molecular descriptors for electrostatic and hydrophobic properties of the 16 mAbs derived using their full-length homology models were examined for potential correlations with the slope. An equation consisting of hydrophobic surface area of full-length antibody and charges on VH, VL, and hinge regions was found to be capable of predicting the concentration-dependent viscosity curves of the antibody solutions. Availability of this computational tool may facilitate material-free high-throughput screening of antibody candidates during early stages of drug discovery and development.

Keywords:  Formulation; high concentration; molecular modeling; monoclonal antibody; multivariate analysis; viscosity

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Year:  2017        PMID: 28125318      PMCID: PMC5384706          DOI: 10.1080/19420862.2017.1285479

Source DB:  PubMed          Journal:  MAbs        ISSN: 1942-0862            Impact factor:   5.857


  30 in total

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3.  Rational design of viscosity reducing mutants of a monoclonal antibody: hydrophobic versus electrostatic inter-molecular interactions.

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4.  Impact of deglycosylation and thermal stress on conformational stability of a full length murine IgG2a monoclonal antibody: observations from molecular dynamics simulations.

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5.  Weak interactions govern the viscosity of concentrated antibody solutions: high-throughput analysis using the diffusion interaction parameter.

Authors:  Brian D Connolly; Chris Petry; Sandeep Yadav; Barthélemy Demeule; Natalie Ciaccio; Jamie M R Moore; Steven J Shire; Yatin R Gokarn
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6.  Mitigation of reversible self-association and viscosity in a human IgG1 monoclonal antibody by rational, structure-guided Fv engineering.

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Journal:  MAbs       Date:  2016-04-06       Impact factor: 5.857

7.  The concentration-dependence of macromolecular parameters.

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Journal:  Biochem J       Date:  1985-11-01       Impact factor: 3.857

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10.  Preclinical screening for acute toxicity of therapeutic monoclonal antibodies in a hu-SCID model.

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  21 in total

1.  In Silico Prediction of Diffusion Interaction Parameter (kD), a Key Indicator of Antibody Solution Behaviors.

Authors:  Dheeraj S Tomar; Satish K Singh; Li Li; Matthew P Broulidakis; Sandeep Kumar
Journal:  Pharm Res       Date:  2018-08-20       Impact factor: 4.200

2.  Multiscale Coarse-Grained Approach to Investigate Self-Association of Antibodies.

Authors:  Saeed Izadi; Thomas W Patapoff; Benjamin T Walters
Journal:  Biophys J       Date:  2020-04-29       Impact factor: 4.033

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Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

4.  Assessment of Therapeutic Antibody Developability by Combinations of In Vitro and In Silico Methods.

Authors:  Adriana-Michelle Wolf Pérez; Nikolai Lorenzen; Michele Vendruscolo; Pietro Sormanni
Journal:  Methods Mol Biol       Date:  2022

5.  Homology modeling and structure-based design improve hydrophobic interaction chromatography behavior of integrin binding antibodies.

Authors:  Arif Jetha; Nels Thorsteinson; Yazen Jmeian; Ajitha Jeganathan; Patricia Giblin; Johan Fransson
Journal:  MAbs       Date:  2018-08-15       Impact factor: 5.857

6.  Prediction of methionine oxidation risk in monoclonal antibodies using a machine learning method.

Authors:  Kannan Sankar; Kam Hon Hoi; Yizhou Yin; Prasanna Ramachandran; Nisana Andersen; Amy Hilderbrand; Paul McDonald; Christoph Spiess; Qing Zhang
Journal:  MAbs       Date:  2018-09-25       Impact factor: 5.857

7.  Machine Learning-Guided Prediction of Antigen-Reactive In Silico Clonotypes Based on Changes in Clonal Abundance through Bio-Panning.

Authors:  Duck Kyun Yoo; Seung Ryul Lee; Yushin Jung; Haejun Han; Hwa Kyoung Lee; Jerome Han; Soohyun Kim; Jisu Chae; Taehoon Ryu; Junho Chung
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8.  Predicting Antibody Developability Profiles Through Early Stage Discovery Screening.

Authors:  Marc Bailly; Carl Mieczkowski; Veronica Juan; Essam Metwally; Daniela Tomazela; Jeanne Baker; Makiko Uchida; Ester Kofman; Fahimeh Raoufi; Soha Motlagh; Yao Yu; Jihea Park; Smita Raghava; John Welsh; Michael Rauscher; Gopalan Raghunathan; Mark Hsieh; Yi-Ling Chen; Hang Thu Nguyen; Nhung Nguyen; Dan Cipriano; Laurence Fayadat-Dilman
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

9.  Rational optimization of a monoclonal antibody improves the aggregation propensity and enhances the CMC properties along the entire pharmaceutical process chain.

Authors:  Joschka Bauer; Sven Mathias; Sebastian Kube; Kerstin Otte; Patrick Garidel; Martin Gamer; Michaela Blech; Simon Fischer; Anne R Karow-Zwick
Journal:  MAbs       Date:  2020 Jan-Dec       Impact factor: 5.857

Review 10.  Toward Drug-Like Multispecific Antibodies by Design.

Authors:  Manali S Sawant; Craig N Streu; Lina Wu; Peter M Tessier
Journal:  Int J Mol Sci       Date:  2020-10-12       Impact factor: 5.923

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