Elena A Pazhenkova1, Vladimir A Lukhtanov1. 1. Department of Karyosystematics, Zoological Institute of Russian Academy of Sciences, Universitetskaya nab. 1, 199034 St. Petersburg, Russias; Department of Entomology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia.
Abstract
It is generally accepted that cases of species' polyphyly in COI trees arising as a result of deep intraspecific divergence are negligible, and the detected cases reflect misidentifications or/and methodological errors. Here we studied the problem of species' non-monophyly through chromosomal and molecular analysis of butterfly taxa close to Melitaea didyma (Esper, 1779) (Lepidoptera, Nymphalidae). We found absence or low interspecific chromosome number variation and presence of intraspecific variation, therefore we conclude that in this group, chromosome numbers have relatively low value as taxonomic markers. Despite low karyotype variability, the group was found to have unexpectedly high mitochondrial haplotype diversity. These haplotypes were clustered in 23 highly diverged haplogroups. Twelve of these haplogroups are associated with nine traditionally recognized and morphologically distinct species Melitaea chitralensis Moore, 1901, Melitaea deserticola Oberthür, 1909, Melitaea didymoides Eversmann, 1847, Melitaea gina Higgins, 1941, Melitaea interrupta Colenati, 1846, Melitaea latonigena Eversmann, 1847, Melitaea mixta Evans, 1912, Melitaea saxatilis Christoph, 1873 and Melitaea sutschana Staudinger, 1892. The rest of the haplogroups (11 lineages) belong to a well-known west-palaearctic species Melitaea didyma. The last species is particularly unusual in the haplotypes we obtained. First, it is clearly polyphyletic with respect to COI gene. Second, the differentiation in COI gene between these mostly allopatric (but in few cases sympatric) eleven lineages is extremely high (up to 7.4%), i.e. much deeper than the "standard" DNA barcode species threshold (2.7-3%). This level of divergence normally could correspond not even to different species, but to different genera. Despite this divergence, the bearers of these haplogroups were found to be morphologically indistinguishable and, most importantly, to share absolutely the same ecological niches, i.e. demonstrating the pattern which is hardly compatible with hypothesis of multiple cryptic species. Most likely such a profound irregularity in barcodes is caused by reasons other than speciation and represents an extraordinary example of intra-species barcode variability. Given the deep level of genetic differentiation between the lineages, we assume that there was a long period (up to 5.0 My) of allopatric differentiation when the lineages were separated by geographic or/and ecological barriers and evolved in late Pliocene and Pleistocene refugia of north Africa, the Iberian and Balkan Peninsulas, the Middle East and Central Asia. We discuss the refugia-within-refugia concept as a mechanism explaining the presence of additional diverged minor haplogroups within the areas of the major haplogroups. We also provide the first record of Melitaea gina in Azerbaijan and the record of Melitaea didyma turkestanica as a new taxon for Russia and Europe.
It is generally accepted that cases of species' polyphyly in COI trees arising as a result of deep intraspecific divergence are negligible, and the detected cases reflect misidentifications or/and methodological errors. Here we studied the problem of species' non-monophyly through chromosomal and molecular analysis of butterfly taxa close to Melitaea didyma (Esper, 1779) (Lepidoptera, Nymphalidae). We found absence or low interspecific chromosome number variation and presence of intraspecific variation, therefore we conclude that in this group, chromosome numbers have relatively low value as taxonomic markers. Despite low karyotype variability, the group was found to have unexpectedly high mitochondrial haplotype diversity. These haplotypes were clustered in 23 highly diverged haplogroups. Twelve of these haplogroups are associated with nine traditionally recognized and morphologically distinct species Melitaea chitralensis Moore, 1901, Melitaea deserticola Oberthür, 1909, Melitaea didymoides Eversmann, 1847, Melitaea gina Higgins, 1941, Melitaea interrupta Colenati, 1846, Melitaea latonigena Eversmann, 1847, Melitaea mixta Evans, 1912, Melitaea saxatilis Christoph, 1873 and Melitaea sutschana Staudinger, 1892. The rest of the haplogroups (11 lineages) belong to a well-known west-palaearctic species Melitaea didyma. The last species is particularly unusual in the haplotypes we obtained. First, it is clearly polyphyletic with respect to COI gene. Second, the differentiation in COI gene between these mostly allopatric (but in few cases sympatric) eleven lineages is extremely high (up to 7.4%), i.e. much deeper than the "standard" DNA barcode species threshold (2.7-3%). This level of divergence normally could correspond not even to different species, but to different genera. Despite this divergence, the bearers of these haplogroups were found to be morphologically indistinguishable and, most importantly, to share absolutely the same ecological niches, i.e. demonstrating the pattern which is hardly compatible with hypothesis of multiple cryptic species. Most likely such a profound irregularity in barcodes is caused by reasons other than speciation and represents an extraordinary example of intra-species barcode variability. Given the deep level of genetic differentiation between the lineages, we assume that there was a long period (up to 5.0 My) of allopatric differentiation when the lineages were separated by geographic or/and ecological barriers and evolved in late Pliocene and Pleistocene refugia of north Africa, the Iberian and Balkan Peninsulas, the Middle East and Central Asia. We discuss the refugia-within-refugia concept as a mechanism explaining the presence of additional diverged minor haplogroups within the areas of the major haplogroups. We also provide the first record of Melitaea gina in Azerbaijan and the record of Melitaea didyma turkestanica as a new taxon for Russia and Europe.
The (Esper, 1779) species complex, a group of taxa close to (Bryk 1940, Higgins 1941, Kolesnichenko 1999, Kolesnichenko et al. 2011) is widely distributed in the Palaearctic region. This complex exhibits a high level of individual and seasonal variation, although distinction between described taxa and between different populations in wing pattern is often unclear (Higgins 1941, 1955, Lvovsky and Morgun 2007, Oorschot and Coutsis 2014). Simultaneously these butterflies are similar in male and female genitalia structure (Higgins 1941).The significant reviews of this complex were published by Bryk (1940), Higgins (1941, 1955), Kolesnichenko (Kolesnichenko 1999, Kolesnichenko et al. 2011), Tuzov and Churkin (2000). More recently the whole genus Fabricius, 1807 was revised by Oorschot and Coutsis (2014). However, available cytogenetic (Lukhtanov and Kuznetsova 1989), morphological (Lvovsky and Morgun 2007, Kolesnichenko et al. 2011, Oorschot and Coutsis 2014) and molecular (Wahlberg and Zimmermann 2000, Lukhtanov et al. 2009, Dincă et al. 2015) data show that the species complex requires a more detailed study.Combination of molecular and cytogenetic methods is a useful tool for detecting cryptic species (Lukhtanov et al. 2015) and can be a good addition to morphological analysis for ordering complex taxonomic structures (Lukhtanov et al. 2016). In our previous paper we applied analysis of DNA barcodes to demonstrate that complex is a monophyletic group and is represented by multiple deeply diverged mitochondrial DNA haplogroups (Pazhenkova et al. 2015).In the present study we use a combination of molecular and chromosomal markers to analyse additional material collected in Armenia, Bulgaria, Georgia, Greece, Iran, Israel, Kazakhstan, Kyrgyzstan, Russia, Slovenia, Syria and Turkey, in order to reveal PageBreaktaxonomic and phylogeographic structure within the species complex. In our opinion, this group includes the following species: Esper, 1779, Moore, 1901, Oberthür, 1909, Eversmann, 1847, Higgins, 1941, Colenati, 1846, Eversmann, 1847, Evans, 1912, Christoph, 1873 and Staudinger, 1892. This complex does not include the taxa of the complex ( Kollar, 1849, Kollar, 1849, Koçak, 1980 and Sakai, 1978) and the taxa of the complex ( Staudinger, 1881, Kolesnichenko, 1999, Sheljuzhko, 1929, Staudinger, 1886, Frühstorfer, 1917, Sheljuzhko, 1935 and Staudinger, 1895) which were shown to be strongly diverged with respect to genitalia structure (Higgins 1941, Kolesnichenko 1999, Oorschot and Coutsis 2014) and molecular markers (Leneveu et al. 2009).
Material and methods
We studied standard barcodes (658-bp 5’ segment of mitochondrial cytochrome oxidase subunit I). We obtained sequences from 121 specimens collected in Armenia, Bulgaria, Georgia, Greece, Iran, Israel, Kazakhstan, Kyrgyzstan, Russia, Slovenia, Syria and Turkey. DNA was extracted from a single leg removed from each voucher specimen.Legs from 21 specimens were processed at Department of Karyosystematics of Zoological Institute of the Russian Academy of Sciences. Primers and PCR protocol are given in our previous publications (Lukhtanov et al. 2014, Pazhenkova et al. 2015). Sequencing of double-stranded product was carried out at the Research Resource Center for Molecular and Cell Technologies of St. Petersburg State University. Legs from 100 specimens of were processed at the Canadian Centre for DNA Barcoding (CCDB, Biodiversity Institute of Ontario, University of Guelph) using their standard high-throughput protocol described by deWaard et al. (2008). The set of voucher specimens of butterflies is kept in the Zoological Institute of the Russian Academy of Science (St. Petersburg).The analysis involved 265 sequences (including outgroup) (Suppl. material 1). Among them there were 144 published sequences (Wahlberg and Zimmermann 2000, Vila and Bjorklund 2004, Leneveu et al. 2009, Lukhtanov et al. 2009, Dincă 2011, 2015, Hausmann et al. 2011, Ashfaq et al. 2013, Pazhenkova et al. 2015) collected from GenBank.Within the studied samples, we are not completely sure of the identity of specimens (their barcodes were obtained from GenBank) because we were not able to check these vouchers and used the identification of these samples accepted in Ashfaq et al. (2013). According to Kolesnichenko (1999), is a member of the subgroup, but the analysed samples clearly clustered with . Therefore, we can not exclude the possibility that these samples represent a north Pakistani population close to , but not a true .Sequences were aligned using BioEdit software (Hall 1999). Mean uncorrected p-distances between haplogroups were calculated in MEGA7 (Kumar et al. 2015). Phylogenetic hypotheses were inferred using Bayesian inference (BI) as described previously (Vershinina and Lukhtanov 2010, Talavera et al. 2013a,b). Briefly, Bayesian analyses were performed using the program MrBayes 3.1.2 (Huelsenbeck and Ronquist 2001) with default settings as suggested by Mesquite (Maddison and Maddison 2015): burn-in=0.25, nst=6 (GTR + I +G). Two runs of 10 000 000 generations with four chains (one cold and three heated) were performed. Chains were sampled every 10000 generations.Karyotypes were obtained from fresh adult males and processed as previously described (Vershinina et al. 2015). Briefly, gonads were removed from abdomen and placed to freshly prepared fixative (3:1; 96% ethanol and glacial acetic acid) directly after capturing butterfly in the field. Testes were stored in the fixative for 1 month at +4°C. Then the gonads were stained in 2% acetic orcein for 7-10 days at +18-20°C. Haploid chromosome numbers (n) were counted in meiotic metaphase I (MI) and metaphase II (MII).
Results
Karyotype
The haploid chromosome number n=28 was found in prometaphase I, MI and MII cells of seven studied individuals (Table 1, Fig. 1). All chromosome elements formed a gradient size row. The karyotype contained no exceptionally large or small chromosomes.
Table 1.
Chromosome number and localities of samples collected in Iran (province West Azerbaijan) (Collectors: V. Lukhtanov, E. Pazhenkova and N. Shapoval).
Sample
Karyotype
Haplotype
Locality
Altitude
Date
Q153
n=28
M18
25 km E of Mahabad (vic. Darman): N36°45'00"; E45°51'37"
1900–2000 m
10 August 2016
Q155
n=28
25 km E of Mahabad (vic. Darman): N36°45'00"; E45°51'37"
1900–2000 m
10 August 2016
Q156
n=28
M14
25 km E of Mahabad (vic. Darman): N36°45'00"; E45°51'37"
1900–2000 m
10 August 2016
Q157
n=28
M15
25 km E of Mahabad (vic. Darman): N36°45'00,30"; E45°51'36,60"
1900–2000 m
10 August 2016
Q182
n=28
25 km E of Mahabad (vic. Darman): N36°45'00"; E45°51'37"
1900–2000 m
10 August 2016
Q183
n=28
25 km E of Mahabad (vic. Darman): N36°45'00"; E45°51'37"
1900–2000 m
10 August 2016
Q211
n=28
3 km W of Khalifen: N36°44'35"; E45°32'13"
2100–2200 m
11 August 2016
Figure 1.
Karyotypes in male meiosis of from Iran. a sample Q183, prometaphase I, n = 28 b sample Q153, late prometaphase I, n = 28 c sample Q183, MI, n = 28 d sample Q155, M I, n = 28. Scale bar corresponds to 10µ in all figures.
Karyotypes in male meiosis of from Iran. a sample Q183, prometaphase I, n = 28 b sample Q153, late prometaphase I, n = 28 c sample Q183, MI, n = 28 d sample Q155, M I, n = 28. Scale bar corresponds to 10µ in all figures.Chromosome number and localities of samples collected in Iran (province West Azerbaijan) (Collectors: V. Lukhtanov, E. Pazhenkova and N. Shapoval).
COI haplotypes and haplogroups
Bayesian analysis of the barcode region recovered the complex as a monophyletic clade (Fig. 2), which agrees with Leneveu et al. (2009). Despite low karyotype variability, the clade was found to have unexpectedly high mitochondrial haplotype diversity. These haplotypes were clustered in 23 highly diverged haplogroups called , , , , , gina2, , , , , , , neera2, , , , , sutschana2, sutschana3, , turkestanica2, turkestanica3 and turkestanica4 (Figs 2–6, Suppl. material 1). These haplogroups had high support (Bayesian posterior probability from 0.95 to 1) and were associated with particular geographical areas (Fig. 7).
Figure 2.
The Bayesian tree of based on analysis of the cytochrome oxidase subunit I () gene. Numbers at nodes indicate Bayesian posterior probability.
Figure 6.
Fragment of the Bayesian tree of complex (haplogroups , , , , neera2, and ) based on analysis of the gene. Numbers at nodes indicate Bayesian posterior probability.
Figure 7.
Distribution ranges of western haplogroups of complex.
The Bayesian tree of based on analysis of the cytochrome oxidase subunit I () gene. Numbers at nodes indicate Bayesian posterior probability.Fragment of the Bayesian tree of complex (haplogroups and ) based on analysis of gene. Numbers at nodes indicate Bayesian posterior probability.Fragment of the Bayesian tree of complex (haplogroups , , , lathonigena, , , , ) based on analysis of gene. Numbers at nodes indicate Bayesian posterior probability.Fragment of the Bayesian tree of complex (haplogroups , , ) based on analysis of gene. Numbers at nodes indicate Bayesian posterior probability.Fragment of the Bayesian tree of complex (haplogroups , , , , neera2, and ) based on analysis of the gene. Numbers at nodes indicate Bayesian posterior probability.Distribution ranges of western haplogroups of complex.The uncorrected mean p-distances between the haplogroups were high (up to 9.1% between turkestanica4 and ) (Table 2). The majority of them were much higher than the ‘standard’ 2.7–3.0% DNA barcode threshold usually used for allopatric taxa as an indicator for their species distinctness (Lambert et al. 2005, Lukhtanov et al. 2015).
Table 2.
Mean uncorrected p-distances between 23 haplogroups of the species complex (%).
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
1. chitralensis
2. deserticola
8.4
3. didyma
4.2
6.7
4. didymoides
6.3
6.9
4.7
5. gina
5.5
7.5
4.2
5.3
6. gina 2
6.4
9.5
6.5
7.2
6.5
7. interrupta
4.9
6.2
2.7
3.1
4.4
6.1
8. latonigena
5.0
6.9
3.1
4.1
4.7
6.5
3.5
9. liliputana
4.7
7.1
3.1
4.8
5.2
6.8
3.4
3.7
10. mauretanica
4.1
6.3
2.1
4.2
4.8
7.1
2.2
3.1
3.5
11. mixta
2.4
6.9
3.5
5.0
5.2
6.9
4.1
4.6
4.3
3.6
12. neera
3.7
6.8
2.4
4.3
4.9
7.1
2.3
2.9
2.0
2.0
3.3
13. neera 2
3.2
6.7
1.9
4.7
4.5
6.4
2.6
3.0
2.8
2.0
2.7
1.7
14. occidentalis
4.9
6.9
2.9
3.9
4.6
6.4
1.8
3.8
3.9
2.4
4.0
2.8
2.4
15. protaeoccidentis
3.3
5.6
2.1
4.1
4.2
6.7
2.7
2.7
3.0
2.1
2.9
2.1
2.0
3.0
16. saxatilis
5.0
7.9
4.0
4.7
5.4
7.4
3.5
4.5
4.3
3.3
5.0
3.7
3.9
3.9
3.8
17. sutschana
5.6
6.9
3.4
3.5
4.5
6.7
3.1
2.4
3.7
3.5
4.6
2.6
3.3
3.1
3.2
3.9
18. sutschana 2
5.9
7.6
4.0
4.1
5.7
7.7
3.9
3.0
4.3
4.1
5.2
3.2
3.9
4.3
3.8
4.5
1.8
19. sutschana 3
4.7
6.9
2.5
3.4
4.5
7.1
2.6
2.4
3.4
2.6
4.0
2.3
2.4
3.0
2.6
2.7
1.5
2.1
20. turkestanica
3.4
7.0
2.3
4.4
4.3
7.0
3.0
3.4
3.1
2.4
2.7
2.1
1.6
3.1
2.3
3.7
3.6
4.3
2.8
21. turkestanica 2
4.8
7.5
1.1
5.7
5.1
6.6
3.7
4.1
4.1
3.1
4.1
3.4
2.9
3.9
3.0
5.0
4.4
4.4
3.5
3.2
22. turkestanica 3
7.0
8.9
5.8
8.9
6.4
6.4
4.8
6.1
7.1
7.0
6.3
7.9
6.9
5.8
6.0
6.2
7.0
6.9
7.0
6.6
6.4
23. turkestanica 4
7.0
9.1
6.5
7.4
7.0
4.3
6.1
7.3
6.7
7.3
7.4
7.2
6.4
6.6
6.5
7.5
7.2
8.0
7.2
7.4
7.0
4.4
Mean uncorrected p-distances between 23 haplogroups of the species complex (%).Most of the haplogroups were found to be allopatric. However, in some cases barcodes’ clusters did not correspond to the simple allopatric geographical distribution. The sample M22 (haplogroup gina2) was found in sympatry with the haplogroup in north-west Iran. The distance between and gina2 was 6.5%. Haplogroups turkestanica4, turkestanica3 and turkestanica2 were highly diverged (up to 7.4%) as compared with the haplogroup and were found in sympatry PageBreakPageBreakPageBreakwith the haplogroup (Fig. 8). In Slovenia, the specimen BPAL3090-15 (haplogroup neera2) was found together with the haplogroup . The distance between and neera2 was 1.7%.
Figure 8.
Localization of and haplogroups (yellow circles – , black – , green – turkestanica2, red – turkestanica3, blue – turkestanica4)
Localization of and haplogroups (yellow circles – , black – , green – turkestanica2, red – turkestanica3, blue – turkestanica4)Two samples with the haplotypes (haplogroup ), one from Aktobe (Kazakhstan) and one from Samara (Russia) were found in sympatry with haplotypes (haplogroup ). In Karabiryuk (Kazakhstan), two samples with the haplotypes (haplogroup ) were found in sympatry with haplotypes (haplogroup and turkestanica4).
Discussion
Chromosome number variation
The genus is known to be characterized by relatively low interspecific chromosome number variation. The representatives of basal clades (see phylogeny in Leneveu et al. 2009), the taxa of (Linnaeus, 1758), (Lang, 1989), (Rottemburg, 1775), ([Denis & Schiffermüller], 1775) and ([Denis & Schiffermüller], 1775) species groups demonstrate n=30-31 (Federley 1938, de Lesse 1960, Robinson 1971, Larsen 1975, Hesselbarth et al. 1995). These haploid numbers are modal ones not only for , but also for the family and for the order in whole (Robinson 1971, Lukhtanov 2000, 2014). Most likely, one of them (probably, n=31, see Lukhtanov 2014) represents an ancestral lepidopteran condition preserved in the basal lineages of .The younger lineages, the Staudinger, 1882 and species groups, were found to possess lower chromosome numbers varying from n=27 to n=29-30. Within the species group, Staudinger, 1881, the only karyologically studied species, was found to have n=29 (with n=30 as a rare intra-individual variation) (Lukhtanov and Kuznetsova 1989). The species-rich group consists of three complexes: a complex of taxa close to , a complex of taxa close to and a complex of taxa close to . Within these complexes the following chromosome numbers were found: n=29 in (Lukhtanov and Kuznetsova 1989), n=27 in (de Lesse 1960) and different numbers from n=27 to n=29-30 in species of the complex (Table 3).
Table 3.
Chromosome numbers of taxa close to .
Taxon
Chromosome number
Country
Locality
Reference
Melitaeadidyma ssp.
n=28
Italy
Abruzzi
de Lesse 1960
Melitaeadidymaneera
n=28
Kazakhstan
Altai
Lukhtanov and Kuznetsova 1989
Melitaeadidymaneera
n=27
Russia
N Caucasus, Pyatigorsk
Lukhtanov and Kuznetsova 1988
Melitaeainterrupta
n=29
Turkey
de Lesse 1960
Melitaeainterrupta
n=29
Azerbaijan, Nakhichevan
Zangezur Mts
Lukhtanov and Kuznetsova 1989
Melitaealatonigena
n=29–30
Kazakhstan
Altai
Lukhtanov and Kuznetsova 1989
Melitaeadeserticola
n=29
Lebanon
Larsen 1975
Melitaeagina
n=28
Iran
W Azerbaijan
This study
Note. We did not include in the Table 3 the following data: “” (N Iran, Elburz, Demavend) n=28 (de Lesse 1960) because true is not known from Iran (van Oorschot and Coutsis 2014), and the studied samples could represent or . “” (Lebanon, Ain Zhalta Cedars) with n=27 (Larsen 1975) was also not included in the Table 2 since its identity remains unclear. The voucher samples for this count were larvae, and their identification was not certain. They actually could represent (n=27 is typical number for , including the population from Lebanon (de Lesse 1960).
Chromosome numbers of taxa close to .Note. We did not include in the Table 3 the following data: “” (N Iran, Elburz, Demavend) n=28 (de Lesse 1960) because true is not known from Iran (van Oorschot and Coutsis 2014), and the studied samples could represent or . “” (Lebanon, Ain Zhalta Cedars) with n=27 (Larsen 1975) was also not included in the Table 2 since its identity remains unclear. The voucher samples for this count were larvae, and their identification was not certain. They actually could represent (n=27 is typical number for , including the population from Lebanon (de Lesse 1960).Together with (n=29, Larsen 1975), occupies a basal position within the complex (Fig. 6). Therefore analysis of was crucially important for understanding chromosome number evolution in this complex. Our study revealed to have n=28, a number previously observed in from Italy (de Lesse 1960) and from the Kazakh Altai (Lukhtanov and Kuznetsova 1989). Taking into account absence or relatively low level of interspecific chromosome number variation in the complex and presence of intraspecific variation (Table 3), we conclude that in this group chromosome numbers have relatively low value as taxonomic markers (but see: Lukhtanov and Kuznetsova 1989).
DNA barcode haplogroups and problem of non-monophyletic species
Despite low level of chromosome number variability, the complex was found to have unexpectedly high level of mitochondrial haplotype diversity. These haplotypes were clustered in 23 highly diverged haplogroups (Fig. 2). 12 of these haplogroups are associated with nine traditionally recognized and morphologically distinct species , , , , (this species was devided recently in and Matsumura, 1927, see Oorschot and Coutsis 2014), (this species was devided recently in and Oorschot and Coutsis, 2014, see Oorschot and Coutsis 2014), , and .The rest of the haplogroups belong to the well-known west-palearctic species . Despite intrapopulation and seasonal variability, this species is very homogenous with respect to morphology, including the structure of genitalia, a character which is most useful for species separation in (Suschkin 1913, Higgins 1941, Oorschot and Coutsis 2014). In accordance with this homogeinity, in the recent revision (Oorschot and Coutsis 2014) all populations of this species, except for Central Asian populations, were considered as members of the same subspecies . The populations from Central Asia were treated by Oorschot and Coutsis (2014) as a separate subspecies .If we follow the opinion of experts in taxonomy (Kolesnichenko et al. 2011, Oorschot and Coutsis 2014) and accept the traditional taxonomic treatment of the species , we should acknowledge that this species is particularly unusual in the haplotypes we obtained. First, it is clearly polyphyletic with respect to gene, PageBreakand the lineages of are intermixed with other well recognized species on the tree (Figs 2–6). Second, the number of distinct lineages within is unusually high (11 lineages) and their genetic differentiation is extreme. The majority of these haplogroups are allopatric, but some of them have sympatric (/neera1, /turkestanica2, /turkestanica3, /turkestanica4) or partially sympatric (/, /) distribution. The mean uncorrected pairwise distances between the lineages is up to 7.4% if the lineages turkestanica3 and turkestanica4 are considered (Table 2). The lineages turkestanica3 and turkestanica4 are the most diverged lineages of . Together with gina2, on the tree (Fig. 2) they have an intermediate position between the lineage ( + + ) and the lineage ( + ). It even appears as a sister group to PageBreak( + ), but with a very low support (0.54). However, even if the lineages gina2, turkestanica3 and turkestanica4 are not considered, the distances between groupings remains high, up to 4.1% between turkestanica2 and , i.e. much deeper than the “standard” DNA barcode species threshold (2.7-3%) (Hebert et al. 2003, Lukhtanov et al. 2016).There are two theoretically possible explanations for this pattern. First, sensu auctorum can be a mix of multiple species that mostly have allopatric distribution ranges, but some of them are sympatric. Second, the recovered haplogroups (at least the allopatric ones) can represent highly diverged intraspecific lineages. Of course, a combination of the first and the second hypotheses is possible, and a part of the haplogroups could represent different species, and another part of the haplogroups could represent intraspecific variations.In our opinion, the second hypothesis seems to be more plausible. There are the following arguments for the second scenario. First, no morphological differences between the bearers of these haplogroups are known (except for lighter, more yellowish wing colour in the three haplogroups as compared with other haplogroups). The second (and the most convincing) argument is based on our field obseravtion of butterfly habitats and ecological preferences. In ecology the competitive exclusion principle, also known as Gause’s law is one of the most important rule (Gause 1934, Hardin 1960). In complete accordance with this rule, in case of sympatry the most closely related species pairs, such as /, / and / demonstrate clear niche differentiation ( and are more xerophilous, whereas , and are more mesophilous taxa). This was not a case for sympatric haplogroups /neera2, /, /turkestanica3 and /turkestanica4 (Fig. 8). The bearers of these haplogroups were not only morphologically identical, but also were found to fly exactly syntopically and synchronously. This pattern is hardly compatible with non-conspecifity of these haplogroups.and are differentiated ecologically (Pazhenkova et al. 2015), however, there was no ecological separation between bearers of the and haplogroups in cases of their sympatry. In Samara and Aktobe, where the haplogroup was predominant, both haplogroups were found in biotope (steppe), and in Karabiryuk where the haplogroup was predominant, both haplogroups were found in biotope (desert) (Fig. 8). This pattern corresponds more to a result of haplotype introgression than to co-habitation of two ecologically differentiated species.Interestingly, the haplogroup turkestanica2 is not related to the haplogroup and is a derivative from West-European haplogroup . This pattern can be treated as a result of ancient introgression. Generally, footprints of ancient and more recent introgression are both an evidence for transparency of boundaries between populations.The mega-analysis of species-level para- and polyphyly in DNA barcode gene trees was recently conducted by using a huge data set (4977 species and 41,583 specimens of European ) (Mutanen et al. 2016), however without in-depth-analyses of particular cases. This study resulted in conclusion that cases of species’ polyphyly in trees arising as a result of deep intraspecific divergence were negligible, and the detected cases reflected misidentifications or/and methodological errors. Despite this, our analysis demonstrates that species-level polyphyly in DNA barcode based on deep intraspecific divergence may be a real phenomenon.
Distribution ranges and phylogeography
The complex consists of at least 23 haplogroups, the majority of which demonstrated a strict attachment to particular geographic ranges: (north PaPageBreakkistan); (north Africa, Israel, Jordan, Lebanon, Syria); (west Europe); (Asian Russia, Mongolia, North China); (W Iran, Azerbaijan); (Caucasus, NE Turkey); (Asian Russia, north-east Kazakhstan, Mongolia, north-west China); (Armenia, Turkey, Syria, Lebanon, Israel); (south Spain); (Tajikistan, Kyrgyzstan, Uzbekistan, Pakistan, Afghanistan); (east Europe, north Caucasus, west Siberia, north Kazakhstan); (Spain); (north Africa); (north Iran); (Russian Far East, Korea, north-east China) and (Kazakhstan, Kyrgyzstan, Uzbekistan, Tajikistan, west China). With few exceptions (e.g. /, /), the ranges of these haplogroups do not overlap substantially (Fig. 7), and we hypothesize that mitochondrial diversity was formed in allopatry. Given the deep level of genetic differentiation between the lineages, we assume that there was a long period of allopatric differentiation when the lineages were separated by geographic or/and ecological barriers. Under generally accepted maximum 2.3% (Brower 1994) and minimum 1.5% uncorrected pairwise distance per million years (Quek et al. 2004) for sequence of various arthropod taxa, this period can be estimated to be as long as 0.5–5.0 My. In our opinion, this is an evidence that each of these haplogroups evolved in one of the main west-palaearctic late Pliocene and Pleistocene refugia in north Africa (, ), the Iberian Peninsula (, ), the Balkan Peninsula (), the Middle East (, , ) and Central Asia (, , ). The presence of additional diverged minor haplogroups neera2, turkestanica2, turkestanica3, turkestanica4, gina2, which could originate allopatrically in small isolated spots, but currently exist in secondary sympatry with major haplogroups , and , agrees well with the refugia-within-refugia concept (Gòmez and Lunt 2007, Karaiskou et al. 2014). Interestingly, the area of the most diverged haplogroup turkestanica3 is close to the area of the recently described subspecies (Kolesnichenko et al. 2011).
Taxonomic interpretation
We tentatively suggest interpreting the main clusters discovered within sensu stricto (, , , , , and ) as subspecies because each of them has its own distribution range and is distinct with respect to mtDNA (i.e. represents by a monophyletic lineage or a combination of two or three monophyletic lineages). As a result we propose the following classification:
New records
We provide the first record of in Azerbaijan (sample BPAL1697-12, Azerbaijan, Shamkir, 27 June 2011, collector V. Tikhonov).We also record as a new taxon for Russia and Europe (samples BPAL3168-16, BPAL3169-16, BPAL3170-16, BPAL3173-16 Russia, Astrakhanskaya oblast, Bogdinsko-Baskunchaksky zapovednik, 24 May 2008, collector S. Nedoshivina).
Authors: Vlad Dincă; Sergio Montagud; Gerard Talavera; Juan Hernández-Roldán; Miguel L Munguira; Enrique García-Barros; Paul D N Hebert; Roger Vila Journal: Sci Rep Date: 2015-07-24 Impact factor: 4.379
Authors: Marko Mutanen; Sami M Kivelä; Rutger A Vos; Camiel Doorenweerd; Sujeevan Ratnasingham; Axel Hausmann; Peter Huemer; Vlad Dincă; Erik J van Nieukerken; Carlos Lopez-Vaamonde; Roger Vila; Leif Aarvik; Thibaud Decaëns; Konstantin A Efetov; Paul D N Hebert; Arild Johnsen; Ole Karsholt; Mikko Pentinsaari; Rodolphe Rougerie; Andreas Segerer; Gerhard Tarmann; Reza Zahiri; H Charles J Godfray Journal: Syst Biol Date: 2016-06-10 Impact factor: 9.160