| Literature DB >> 28112248 |
Federico Reali1,2, Melissa J Morine1, Ozan Kahramanoğulları1,2, Suryaprakash Raichur3, Hans-Christoph Schneider4, Daniel Crowther4, Corrado Priami1,2.
Abstract
Recent research adds to a growing body of literature on the essential role of ceramides in glucose homeostasis and insulin signaling, while the mechanistic interplay between various components of ceramide metabolism remains to be quantified. We present an extended model of C16:0 ceramide production through both the de novo synthesis and the salvage pathways. We verify our model with a combination of published models and independent experimental data. In silico experiments of the behavior of ceramide and related bioactive lipids in accordance with the observed transcriptomic changes in obese/diabetic murine macrophages at 5 and 16 weeks support the observation of insulin resistance only at the later phase. Our analysis suggests the pivotal role of ceramide synthase, serine palmitoyltransferase and dihydroceramide desaturase involved in the de novo synthesis and the salvage pathways in influencing insulin resistance versus its regulation.Entities:
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Year: 2017 PMID: 28112248 PMCID: PMC5253739 DOI: 10.1038/srep41231
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1(a) The model extends the one in ref. 5 with additional reactions identified in the literature in green. Degradation and production reactions are omitted. Metabolites with time-dependent variables are marked with the symbol ‘*’. (b) Simulation results of the extended models, both deterministic and stochastic, for the concentrations in RAW 264.7 cells and BMDM measured in pmol/μg DNA. The model simulates all the sphingolipids involved in the ceramide pathway. For the stochastic simulations a scaling factor 1000 is used. x-axis: time in hours. (c) The log2 AUC-FC/AUC-Control ratio for the sphingolipids in the legend. The fold-change is varied from 0.25 to 4.
Figure 2(a,b) The up (red boundary) and down (green boundary) regulated enzymes in obese mice, according to genes significantly differentially expressed, after 5 (Supplementary Table S3) and 16 weeks (Supplementary Table S4) of chow diet. (c,d) the log2 AUC-FC/AUC-Control ratio for the sphingolipids in the legend. The fold-change of the enzymes highlighted in (a,b) are varied from 1 to 4.
Figure 3The network of interactions obtained from the sensitivity analysis for enzymes.
Edges are red if the increase of the rate causes an increase of the concentration of the sphingolipid node; green if the concentration decreases. The thickness of the edges is proportional to the log2 of the AUC ratio. Orange rectangles and blue circles, respectively, are the sphingolipids and the enzymes.