Literature DB >> 28111164

Reclassification of non-type strain Clostridium pasteurianum NRRL B-598 as Clostridium beijerinckii NRRL B-598.

Karel Sedlar1, Jan Kolek2, Ivo Provaznik3, Petra Patakova4.   

Abstract

The complete genome sequence of non-type strain Clostridium pasteurianum NRRL B-598 was introduced last year; it is an oxygen tolerant, spore-forming, mesophilic heterofermentative bacterium with high hydrogen production and acetone-butanol fermentation ability. The basic genome statistics have shown its similarity to C. beijerinckii rather than the C. pasteurianum species. Here, we present a comparative analysis of the strain with several other complete clostridial genome sequences. Besides a 16S rRNA gene sequence comparison, digital DNA-DNA hybridization (dDDH) and phylogenomic analysis confirmed an inaccuracy of the taxonomic status of strain Clostridium pasteurianum NRRL B-598. Therefore, we suggest its reclassification to be Clostridium beijerinckii NRRL B-598. This is a specific strain and is not identical to other C. beijerinckii strains. This misclassification explains its unexpected behavior, different from other C. pasteurianum strains; it also permits better understanding of the bacterium for a future genetic manipulation that might increase its biofuel production potential.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Clostridium beijerinckii; Clostridium pasteurianum; Phylogenomic analysis; Reclassification

Mesh:

Substances:

Year:  2017        PMID: 28111164     DOI: 10.1016/j.jbiotec.2017.01.003

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  9 in total

1.  The Draft Genome Sequence of a Novel High-Efficient Butanol-Producing Bacterium Clostridium Diolis Strain WST.

Authors:  Chaoyang Chen; Chongran Sun; Yi-Rui Wu
Journal:  Curr Microbiol       Date:  2018-03-21       Impact factor: 2.188

2.  Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production.

Authors:  Chongran Sun; Shuangfei Zhang; Fengxue Xin; Sabarathinam Shanmugam; Yi-Rui Wu
Journal:  Biotechnol Biofuels       Date:  2018-02-15       Impact factor: 6.040

3.  Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq.

Authors:  Karel Sedlar; Pavlina Koscova; Maryna Vasylkivska; Barbora Branska; Jan Kolek; Kristyna Kupkova; Petra Patakova; Ivo Provaznik
Journal:  BMC Genomics       Date:  2018-05-30       Impact factor: 3.969

4.  Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level.

Authors:  Petra Patakova; Barbora Branska; Karel Sedlar; Maryna Vasylkivska; Katerina Jureckova; Jan Kolek; Pavlina Koscova; Ivo Provaznik
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

5.  A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock.

Authors:  Karel Sedlar; Jan Kolek; Markus Gruber; Katerina Jureckova; Barbora Branska; Gergely Csaba; Maryna Vasylkivska; Ralf Zimmer; Petra Patakova; Ivo Provaznik
Journal:  Biotechnol Biofuels       Date:  2019-10-13       Impact factor: 6.040

6.  Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598.

Authors:  Maryna Vasylkivska; Katerina Jureckova; Barbora Branska; Karel Sedlar; Jan Kolek; Ivo Provaznik; Petra Patakova
Journal:  PLoS One       Date:  2019-11-07       Impact factor: 3.240

7.  Identification and Validation of Reference Genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR Using RNA-Seq Data.

Authors:  Katerina Jureckova; Hana Raschmanova; Jan Kolek; Maryna Vasylkivska; Barbora Branska; Petra Patakova; Ivo Provaznik; Karel Sedlar
Journal:  Front Microbiol       Date:  2021-03-18       Impact factor: 5.640

8.  Flow cytometry analysis of Clostridium beijerinckii NRRL B-598 populations exhibiting different phenotypes induced by changes in cultivation conditions.

Authors:  Barbora Branska; Zora Pechacova; Jan Kolek; Maryna Vasylkivska; Petra Patakova
Journal:  Biotechnol Biofuels       Date:  2018-04-06       Impact factor: 6.040

9.  Deeper below the surface-transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock.

Authors:  Petra Patakova; Jan Kolek; Katerina Jureckova; Barbora Branska; Karel Sedlar; Maryna Vasylkivska; Ivo Provaznik
Journal:  Microbiologyopen       Date:  2020-12-14       Impact factor: 3.904

  9 in total

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