Literature DB >> 28106469

Building a DNA barcode library of Alaska's non-marine arthropods.

Derek S Sikes1, Matthew Bowser2, John M Morton2, Casey Bickford1, Sarah Meierotto1,3, Kyndall Hildebrandt1.   

Abstract

Climate change may result in ecological futures with novel species assemblages, trophic mismatch, and mass extinction. Alaska has a limited taxonomic workforce to address these changes. We are building a DNA barcode library to facilitate a metabarcoding approach to monitoring non-marine arthropods. Working with the Canadian Centre for DNA Barcoding, we obtained DNA barcodes from recently collected and authoritatively identified specimens in the University of Alaska Museum (UAM) Insect Collection and the Kenai National Wildlife Refuge collection. We submitted tissues from 4776 specimens, of which 81% yielded DNA barcodes representing 1662 species and 1788 Barcode Index Numbers (BINs), of primarily terrestrial, large-bodied arthropods. This represents 84% of the species available for DNA barcoding in the UAM Insect Collection. There are now 4020 Alaskan arthropod species represented by DNA barcodes, after including all records in Barcode of Life Data Systems (BOLD) of species that occur in Alaska - i.e., 48.5% of the 8277 Alaskan, non-marine-arthropod, named species have associated DNA barcodes. An assessment of the identification power of the library in its current state yielded fewer species-level identifications than expected, but the results were not discouraging. We believe we are the first to deliberately begin development of a DNA barcode library of the entire arthropod fauna for a North American state or province. Although far from complete, this library will become increasingly valuable as more species are added and costs to obtain DNA sequences fall.

Keywords:  Arthropoda; DNA barcoding; biodiversity; biodiversité; codage à barres de l’ADN; inventaire; inventory; monitoring

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Substances:

Year:  2016        PMID: 28106469     DOI: 10.1139/gen-2015-0203

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  8 in total

Review 1.  Circumpolar terrestrial arthropod monitoring: A review of ongoing activities, opportunities and challenges, with a focus on spiders.

Authors:  Mark A K Gillespie; Matthias Alfredsson; Isabel C Barrio; Joe Bowden; Peter Convey; Stephen J Coulson; Lauren E Culler; Martin T Dahl; Kathryn M Daly; Seppo Koponen; Sarah Loboda; Yuri Marusik; Jonas P Sandström; Derek S Sikes; Jozef Slowik; Toke T Høye
Journal:  Ambio       Date:  2019-04-27       Impact factor: 5.129

2.  Arthropod and oligochaete assemblages from grasslands of the southern Kenai Peninsula, Alaska.

Authors:  Matthew L Bowser; John M Morton; John Delton Hanson; Dawn R Magness; Mallory Okuly
Journal:  Biodivers Data J       Date:  2017-01-12

3.  Revision of the genus Lichtwardtia Enderlein in Southeast Asia, a tale of highly diverse male terminalia (Diptera, Dolichopodidae).

Authors:  Chufei Tang; Ding Yang; Patrick Grootaert
Journal:  Zookeys       Date:  2018-11-21       Impact factor: 1.546

4.  Relicts from Glacial Times: The Ground Beetle Pterostichus adstrictus Eschscholtz, 1823 (Coleoptera: Carabidae) in the Austrian Alps.

Authors:  Wolfgang Paill; Stephan Koblmüller; Thomas Friess; Barbara-Amina Gereben-Krenn; Christian Mairhuber; Michael J Raupach; Lukas Zangl
Journal:  Insects       Date:  2021-01-19       Impact factor: 2.769

5.  DNA Barcoding versus Morphological Variability of Pterostichus brevicornis brevicornis (Kirby, 1837) (Coleoptera, Carabidae) in the Arctic and Subarctic.

Authors:  Natalia Andreevna Zubrii; Boris Yurevich Filippov; Alexander Vasilevich Kondakov; Olga Arturovna Khruleva; Leonid Borisovich Rybalov; Darya Vitalievna Vikhreva
Journal:  Insects       Date:  2022-02-16       Impact factor: 2.769

Review 6.  Life barcoded by DNA barcodes.

Authors:  Mali Guo; Chaohai Yuan; Leyan Tao; Yafei Cai; Wei Zhang
Journal:  Conserv Genet Resour       Date:  2022-08-15       Impact factor: 0.991

7.  Integrative taxonomy of Nearctic and Palaearctic Aleocharinae: new species, synonymies, and records (Coleoptera, Staphylinidae).

Authors:  Adam J Brunke; Mikko Pentinsaari; Jan Klimaszewski
Journal:  Zookeys       Date:  2021-05-31       Impact factor: 1.546

8.  DNA barcoding of Austrian snow scorpionflies (Mecoptera, Boreidae) reveals potential cryptic diversity in Boreus westwoodi.

Authors:  Lukas Zangl; Elisabeth Glatzhofer; Raphael Schmid; Susanne Randolf; Stephan Koblmüller
Journal:  PeerJ       Date:  2021-05-14       Impact factor: 2.984

  8 in total

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