Literature DB >> 28106223

Next generation of network medicine: interdisciplinary signaling approaches.

Tamas Korcsmaros1, Maria Victoria Schneider2, Giulio Superti-Furga3.   

Abstract

In the last decade, network approaches have transformed our understanding of biological systems. Network analyses and visualizations have allowed us to identify essential molecules and modules in biological systems, and improved our understanding of how changes in cellular processes can lead to complex diseases, such as cancer, infectious and neurodegenerative diseases. "Network medicine" involves unbiased large-scale network-based analyses of diverse data describing interactions between genes, diseases, phenotypes, drug targets, drug transport, drug side-effects, disease trajectories and more. In terms of drug discovery, network medicine exploits our understanding of the network connectivity and signaling system dynamics to help identify optimal, often novel, drug targets. Contrary to initial expectations, however, network approaches have not yet delivered a revolution in molecular medicine. In this review, we propose that a key reason for the limited impact, so far, of network medicine is a lack of quantitative multi-disciplinary studies involving scientists from different backgrounds. To support this argument, we present existing approaches from structural biology, 'omics' technologies (e.g., genomics, proteomics, lipidomics) and computational modeling that point towards how multi-disciplinary efforts allow for important new insights. We also highlight some breakthrough studies as examples of the potential of these approaches, and suggest ways to make greater use of the power of interdisciplinarity. This review reflects discussions held at an interdisciplinary signaling workshop which facilitated knowledge exchange from experts from several different fields, including in silico modelers, computational biologists, biochemists, geneticists, molecular and cell biologists as well as cancer biologists and pharmacologists.

Entities:  

Mesh:

Year:  2017        PMID: 28106223     DOI: 10.1039/c6ib00215c

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  14 in total

1.  Acquisition of Invasiveness by Breast Adenocarcinoma Cells Engages Established Hallmarks and Novel Regulatory Mechanisms.

Authors:  Hanaa Mousa; Mahmoud Elgamal; Reham Ghazal Marei; Nazariy Souchelnytskyi; Kah-Wai Lin; Serhiy Souchelnytskyi
Journal:  Cancer Genomics Proteomics       Date:  2019 Nov-Dec       Impact factor: 4.069

2.  Inflammatory bowel disease biomarkers of human gut microbiota selected via different feature selection methods.

Authors:  Burcu Bakir-Gungor; Hilal Hacılar; Amhar Jabeer; Ozkan Ufuk Nalbantoglu; Oya Aran; Malik Yousef
Journal:  PeerJ       Date:  2022-04-25       Impact factor: 3.061

Review 3.  The Scope of Big Data in One Medicine: Unprecedented Opportunities and Challenges.

Authors:  Molly E McCue; Annette M McCoy
Journal:  Front Vet Sci       Date:  2017-11-16

Review 4.  Whither systems medicine?

Authors:  Rolf Apweiler; Tim Beissbarth; Michael R Berthold; Nils Blüthgen; Yvonne Burmeister; Olaf Dammann; Andreas Deutsch; Friedrich Feuerhake; Andre Franke; Jan Hasenauer; Steve Hoffmann; Thomas Höfer; Peter Lm Jansen; Lars Kaderali; Ursula Klingmüller; Ina Koch; Oliver Kohlbacher; Lars Kuepfer; Frank Lammert; Dieter Maier; Nico Pfeifer; Nicole Radde; Markus Rehm; Ingo Roeder; Julio Saez-Rodriguez; Ulrich Sax; Bernd Schmeck; Andreas Schuppert; Bernd Seilheimer; Fabian J Theis; Julio Vera; Olaf Wolkenhauer
Journal:  Exp Mol Med       Date:  2018-03-02       Impact factor: 8.718

Review 5.  CD44/CD44v6 a Reliable Companion in Cancer-Initiating Cell Maintenance and Tumor Progression.

Authors:  Zhe Wang; Kun Zhao; Thilo Hackert; Margot Zöller
Journal:  Front Cell Dev Biol       Date:  2018-08-28

6.  Systems Medicine Disease: Disease Classification and Scalability Beyond Networks and Boundary Conditions.

Authors:  Richard Berlin; Russell Gruen; James Best
Journal:  Front Bioeng Biotechnol       Date:  2018-08-07

Review 7.  Ping-Pong-Tumor and Host in Pancreatic Cancer Progression.

Authors:  Wei Mu; Zhe Wang; Margot Zöller
Journal:  Front Oncol       Date:  2019-12-16       Impact factor: 6.244

8.  ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways.

Authors:  Agatha Treveil; Balazs Bohar; Padhmanand Sudhakar; Lejla Gul; Luca Csabai; Marton Olbei; Martina Poletti; Matthew Madgwick; Tahila Andrighetti; Isabelle Hautefort; Dezso Modos; Tamas Korcsmaros
Journal:  PLoS Comput Biol       Date:  2021-02-03       Impact factor: 4.475

9.  Quantification of Proteins Involved in Intestinal Epithelial Handling of Xenobiotics.

Authors:  Zubida M Al-Majdoub; Narciso Couto; Brahim Achour; Matthew D Harwood; Gordon Carlson; Geoffrey Warhurst; Jill Barber; Amin Rostami-Hodjegan
Journal:  Clin Pharmacol Ther       Date:  2020-12-05       Impact factor: 6.875

Review 10.  Big data in IBD: big progress for clinical practice.

Authors:  Nasim Sadat Seyed Tabib; Matthew Madgwick; Padhmanand Sudhakar; Bram Verstockt; Tamas Korcsmaros; Séverine Vermeire
Journal:  Gut       Date:  2020-02-28       Impact factor: 23.059

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