Literature DB >> 28103688

Structure Based Substrate Specificity Analysis of Heparan Sulfate 6-O-Sulfotransferases.

Yongmei Xu1, Andrea F Moon2, Shuqin Xu1,3, Juno M Krahn2, Jian Liu1, Lars C Pedersen2.   

Abstract

Heparan sulfate (HS) is a sulfated polysaccharide exhibiting essential physiological functions. HS 6-O-sulfotransferase (6-OST) transfers a sulfo group to the 6-OH position of glucosamine units to confer a variety of HS biological activities. There are three different isoforms of 6-OST in the human genome. Here, we report crystal structures of the ternary complex of 6-OST with the sulfo donor analog 3'-phosphoadenosine 5'-phosphate and three different oligosaccharide substrates at 1.95 to 2.1 Å resolutions. Structural and mutational analyses reveal amino acid residues that contribute to catalysis and substrate recognition of 6-OST. Unexpectedly, the structures reveal 6-OST engages HS in a completely different orientation than other HS sulfotransferases and sheds light on the basic HS requirements for specificity. These findings also contribute structural information to understand mutations in human 6-OST isoform 1 associated with the human genetic disease idiopathic hypogonadotropic hypogonadism characterized by incomplete or lack of puberty.

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Year:  2016        PMID: 28103688      PMCID: PMC5331487          DOI: 10.1021/acschembio.6b00841

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  37 in total

1.  Crystal structure of the sulfotransferase domain of human heparan sulfate N-deacetylase/ N-sulfotransferase 1.

Authors:  Y Kakuta; T Sueyoshi; M Negishi; L C Pedersen
Journal:  J Biol Chem       Date:  1999-04-16       Impact factor: 5.157

Review 2.  Order out of chaos: assembly of ligand binding sites in heparan sulfate.

Authors:  Jeffrey D Esko; Scott B Selleck
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

3.  Structural and functional study of D-glucuronyl C5-epimerase.

Authors:  Yi Qin; Jiyuan Ke; Xin Gu; Jianping Fang; Wucheng Wang; Qifei Cong; Jie Li; Jinzhi Tan; Joseph S Brunzelle; Chenghai Zhang; Yi Jiang; Karsten Melcher; Jin-ping Li; H Eric Xu; Kan Ding
Journal:  J Biol Chem       Date:  2015-01-07       Impact factor: 5.157

4.  Heparan sulfate 6-O-sulfotransferase 1, a gene involved in extracellular sugar modifications, is mutated in patients with idiopathic hypogonadotrophic hypogonadism.

Authors:  Janne Tornberg; Gerasimos P Sykiotis; Kimberly Keefe; Lacey Plummer; Xuan Hoang; Janet E Hall; Richard Quinton; Stephanie B Seminara; Virginia Hughes; Guy Van Vliet; Stan Van Uum; William F Crowley; Hiroko Habuchi; Koji Kimata; Nelly Pitteloud; Hannes E Bülow
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-23       Impact factor: 11.205

5.  Enzymatic placement of 6-O-sulfo groups in heparan sulfate.

Authors:  Renpeng Liu; Jian Liu
Journal:  Biochemistry       Date:  2011-05-02       Impact factor: 3.162

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.

Authors:  Andrea F Moon; Suzanne C Edavettal; Joe M Krahn; Eva M Munoz; Masahiko Negishi; Robert J Linhardt; Jian Liu; Lars C Pedersen
Journal:  J Biol Chem       Date:  2004-08-10       Impact factor: 5.157

8.  Redirecting the substrate specificity of heparan sulfate 2-O-sulfotransferase by structurally guided mutagenesis.

Authors:  Heather N Bethea; Ding Xu; Jian Liu; Lars C Pedersen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-20       Impact factor: 11.205

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  9 in total

1.  Controlled Chemoenzymatic Synthesis of Heparan Sulfate Oligosaccharides.

Authors:  Weigang Lu; Chengli Zong; Pradeep Chopra; Lauren E Pepi; Yongmei Xu; I Jonathan Amster; Jian Liu; Geert-Jan Boons
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-30       Impact factor: 15.336

Review 2.  Oligosaccharide Synthesis and Translational Innovation.

Authors:  Larissa Krasnova; Chi-Huey Wong
Journal:  J Am Chem Soc       Date:  2019-02-18       Impact factor: 15.419

3.  Synthetic oligosaccharides can replace animal-sourced low-molecular weight heparins.

Authors:  Yongmei Xu; Kasemsiri Chandarajoti; Xing Zhang; Vijayakanth Pagadala; Wenfang Dou; Debra Moorman Hoppensteadt; Erica M Sparkenbaugh; Brian Cooley; Sharon Daily; Nigel S Key; Diana Severynse-Stevens; Jawed Fareed; Robert J Linhardt; Rafal Pawlinski; Jian Liu
Journal:  Sci Transl Med       Date:  2017-09-06       Impact factor: 17.956

Review 4.  Potential Use of Anti-Inflammatory Synthetic Heparan Sulfate to Attenuate Liver Damage.

Authors:  Katelyn Arnold; Yi-En Liao; Jian Liu
Journal:  Biomedicines       Date:  2020-11-16

Review 5.  Heparan Sulfate Proteoglycans: Key Mediators of Stem Cell Function.

Authors:  Maanasa Ravikumar; Raymond Alexander Alfred Smith; Victor Nurcombe; Simon M Cool
Journal:  Front Cell Dev Biol       Date:  2020-11-19

Review 6.  New tools for evaluating protein tyrosine sulfation and carbohydrate sulfation.

Authors:  Sharon Yeoh; Richard Bayliss
Journal:  Biochem J       Date:  2018-10-05       Impact factor: 3.857

Review 7.  Heparan Sulfate Proteoglycans Biosynthesis and Post Synthesis Mechanisms Combine Few Enzymes and Few Core Proteins to Generate Extensive Structural and Functional Diversity.

Authors:  Thibault Annaval; Rebekka Wild; Yoann Crétinon; Rabia Sadir; Romain R Vivès; Hugues Lortat-Jacob
Journal:  Molecules       Date:  2020-09-14       Impact factor: 4.411

Review 8.  Investigation of the biological functions of heparan sulfate using a chemoenzymatic synthetic approach.

Authors:  Zhangjie Wang; Katelyn Arnold; Vijay Manohar Dhurandhare; Yongmei Xu; Jian Liu
Journal:  RSC Chem Biol       Date:  2021-02-22

9.  Using engineered 6-O-sulfotransferase to improve the synthesis of anticoagulant heparin.

Authors:  Lin Yi; Yongmei Xu; Andrea M Kaminski; Xiaobing Chang; Vijayakanth Pagadala; Maurice Horton; Guowei Su; Zhangjie Wang; Genmin Lu; Pamela Conley; Zhenqing Zhang; Lars C Pedersen; Jian Liu
Journal:  Org Biomol Chem       Date:  2020-10-21       Impact factor: 3.876

  9 in total

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