Literature DB >> 28103681

Observing Biosynthetic Activity Utilizing Next Generation Sequencing and the DNA Linked Enzyme Coupled Assay.

Markus de Raad1, Cyrus Modavi1, David J Sukovich1, J Christopher Anderson1.   

Abstract

Currently, the identification of new genes drastically outpaces current experimental methods for determining their enzymatic function. This disparity necessitates the development of high-throughput techniques that operate with the same scalability as modern gene synthesis and sequencing technologies. In this paper, we demonstrate the versatility of the recently reported DNA-Linked Enzyme-Coupled Assay (DLEnCA) and its ability to support high-throughput data acquisition through next-generation sequencing (NGS). Utilizing methyltransferases, we highlight DLEnCA's ability to rapidly profile an enzyme's substrate specificity, determine relative enzyme kinetics, detect biosynthetic formation of a target molecule, and its potential to benefit from the scales and standardization afforded by NGS. This improved methodology minimizes the effort in acquiring biosynthetic knowledge by tying biochemical techniques to the rapidly evolving abilities in sequencing and synthesizing DNA.

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Year:  2016        PMID: 28103681     DOI: 10.1021/acschembio.6b00652

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  2 in total

1.  Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping.

Authors:  Simon Höllerer; Laetitia Papaxanthos; Anja Cathrin Gumpinger; Katrin Fischer; Christian Beisel; Karsten Borgwardt; Yaakov Benenson; Markus Jeschek
Journal:  Nat Commun       Date:  2020-07-15       Impact factor: 14.919

2.  Enzyme promiscuity shapes adaptation to novel growth substrates.

Authors:  Gabriela I Guzmán; Troy E Sandberg; Ryan A LaCroix; Ákos Nyerges; Henrietta Papp; Markus de Raad; Zachary A King; Ying Hefner; Trent R Northen; Richard A Notebaart; Csaba Pál; Bernhard O Palsson; Balázs Papp; Adam M Feist
Journal:  Mol Syst Biol       Date:  2019-04-08       Impact factor: 11.429

  2 in total

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