Literature DB >> 28103023

Rapid Estimation of Catalytic Efficiency by Cumulative Atomic Multipole Moments: Application to Ketosteroid Isomerase Mutants.

Wiktor Beker1, Marc W van der Kamp2,3,4, Adrian J Mulholland3,4, W Andrzej Sokalski1.   

Abstract

We propose a simple atomic multipole electrostatic model to rapidly evaluate the effects of mutation on enzyme activity and test its performance on wild-type and mutant ketosteroid isomerase. The predictions of our atomic multipole model are similar to those obtained with symmetry-adapted perturbation theory at a fraction of the computational cost. We further show that this approach is relatively insensitive to the precise amino acid side chain conformation in mutants and may thus be useful in computational enzyme (re)design.

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Year:  2017        PMID: 28103023     DOI: 10.1021/acs.jctc.6b01131

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Predicting substituent effects on activation energy changes by static catalytic fields.

Authors:  Martyna Chojnacka; Mikolaj Feliks; Wiktor Beker; W Andrzej Sokalski
Journal:  J Mol Model       Date:  2017-12-22       Impact factor: 1.810

2.  Bottom-Up Nonempirical Approach To Reducing Search Space in Enzyme Design Guided by Catalytic Fields.

Authors:  Wiktor Beker; W Andrzej Sokalski
Journal:  J Chem Theory Comput       Date:  2020-04-23       Impact factor: 6.006

3.  Extreme Catalytic Power of Ketosteroid Isomerase Related to the Reversal of Proton Dislocations in Hydrogen-Bond Network.

Authors:  Paweł Kędzierski; Maria Zaczkowska; W Andrzej Sokalski
Journal:  J Phys Chem B       Date:  2020-04-27       Impact factor: 2.991

4.  Extension of an Atom-Atom Dispersion Function to Halogen Bonds and Its Use for Rational Design of Drugs and Biocatalysts.

Authors:  Wiktoria Jedwabny; Edyta Dyguda-Kazimierowicz; Katarzyna Pernal; Krzysztof Szalewicz; Konrad Patkowski
Journal:  J Phys Chem A       Date:  2021-02-23       Impact factor: 2.781

  4 in total

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