| Literature DB >> 28100079 |
Zeynep Alkan Alkaya1, Halil İlkimen2, Cengiz Yenikaya2, Yasemin Kaygısız3, Metin Bülbül3, Tuncay Tunç4, Musa Sarı5.
Abstract
A novel proton transferEntities:
Keywords: 2,6-pyridinedicarboxylic acid; 2-amino-6-sulfamoylbenzothiazole; Carbonic anhydrase; metal complex; proton transfer; statistical analyses
Mesh:
Substances:
Year: 2017 PMID: 28100079 PMCID: PMC6009966 DOI: 10.1080/14756366.2016.1247058
Source DB: PubMed Journal: J Enzyme Inhib Med Chem ISSN: 1475-6366 Impact factor: 5.051
Figure 1.Syntheses of all compounds (a for SMABT and b for 1 and c for 2–4 and d for 5).
Crystal data and structure refinement details for compounds 2–4.
| Empirical formula | C21H22N5O14S2Fe | C28H32N8O17S4Co | C28H32N8O17S4Ni |
| Formula weight | 688.41 | 939.79 | 939.55 |
| T[K] | 296(2) | 296(2) | 296(2) |
| Wavelength (Å) | 0.71073 | 0.71073 | 0.71073 |
| Crystal system, space group | Monoclinic, P21/c | Triclinic, P | Triclinic, P |
| Unit cell dimensions (Å, °) | |||
| a | 13.287(3) | 9.2195(3) | 9.118(4) |
| b | 28.417(6) | 14.4582(4) | 14.428(5) |
| c | 7.5289(15) | 14.6132(4) | 14.614(5) |
| α | 98.6100(10) | 98.902(19) | |
| β | 102.199(4) | 106.4460(10) | 106.27(2) |
| γ | 91.2240(10) | 91.19(2) | |
| V (Å3) | 2778.6(10) | 1842.97(9) | 1819.1(11) |
| Z | 4 | 2 | 2 |
| Absorbtion coefficient (mm−1) | 0.772 | 0.780 | 0.852 |
| Dcalc (mg/m3) | 1.646 | 1.694 | 1.715 |
| F(000) | 1412 | 966 | 968 |
| Crystal dimensions (mm) | 0.32 × 0.11 × 0.064 | 0.70 × 0.29 × 0.29 | 0.36 × 0.22 × 0.18 |
| θ range for data collection (°) | 1.43–28.83 | 1.43–28.56 | 1.43–28.46 |
| Index ranges | −18≤ h ≤15 | −12≤ h ≤12 | −12≤ h ≤12 |
| Reflections collected | 7755 | 40682 | 36415 |
| Independent reflections | 7265 | 9410 | 9189 |
| Data/parameters | 5418/428 | 7932/579 | 6014/579 |
| Max. and min. transmission | 0.955, 0.903 | 0.798, 0.762 | 0.858, 0.799 |
| Final R indices [I ≥ 2σ(I)] | R1 = 0.0583 | R1 = 0.0374 | R1 = 0.0606 |
| R indices (all data) | R1 = 0.1251 | R1 = 0.0448 | R1 = 0.1022 |
| Goodness-of-fit on F2 | 1.203 | 1.077 | 0.997 |
| Largest difference in peak and hole (e Å−3) | 0.713, −0.544 | 0.539, −0.402 | 0.633, −0.568 |
Selected bond distances [Å] and angles [°] of compounds 2–4.
| Compound | |||||
| Fe1-N1 | 2.086(5) | Fe1-O1 | 2.034(5) | Fe1-O5 | 2.023(4) |
| Fe1-N2 | 2.068(5) | Fe1-O2 | 2.059(4) | Fe1-O6 | 2.004(5) |
| O1-Fe1-O2 | 150.62(18) | O1-Fe1-N2 | 115.50(19) | O2-Fe1-N1 | 74.96(17) |
| O1-Fe1-O5 | 90.02(19) | O5-Fe1-O2 | 94.58(19) | O2-Fe1-N2 | 93.71(17) |
| O1-Fe1-O6 | 95.6(2) | O6-Fe1-O2 | 94.14(19) | O5-Fe1-N1 | 103.62(18) |
| N1-Fe1-N2 | 168.6(2) | O1-Fe1-N1 | 75.76(18) | O5-Fe1-N2 | 75.68(18) |
| Compound | |||||
| Co1-N1 | 2.0239(14) | Co1-O1 | 2.1992(15) | Co1-O5 | 2.1251(14) |
| Co1-N2 | 2.0277(14) | Co1-O2 | 2.1148(14) | Co1-O6 | 2.1809(14) |
| N1-Co1-N2 | 178.57(6) | N2-Co1-O1 | 103.82(5) | O1-Co1-O5 | 92.53(6) |
| N1-Co1-O1 | 74.81(5) | N2-Co1-O2 | 104.12(6) | O1-Co1-O6 | 92.11(6) |
| N1-Co1-O2 | 77.21(6) | N2-Co1-O5 | 76.92(6) | O2-Co1-O5 | 98.43(6) |
| N1-Co1-O5 | 103.47(6) | N2-Co1-O6 | 75.10(5) | O2-Co1-O6 | 90.37(6) |
| N1-Co1-O6 | 104.45(5) | O1-Co1-O2 | 151.64(5) | O5-Co1-O6 | 151.94(5) |
| Compound | |||||
| Ni1-N1 | 1.973(3) | Ni1-O1 | 2.151(3) | Ni1-O5 | 2.094(3) |
| Ni1-N2 | 1.970(3) | Ni1-O2 | 2.089(3) | Ni1-O6 | 2.161(3) |
| N2-Ni1-N1 | 178.67(12) | O2-Ni1-O5 | 95.30(11) | N2-Ni1-O6 | 76.67(11) |
| N2-Ni1-O2 | 101.98(11) | N2-Ni1-O1 | 103.13(11) | N1-Ni1-O6 | 102.49(11) |
| N1-Ni1-O2 | 79.04(11) | N1-Ni1-O1 | 75.82(11) | O2-Ni1-O6 | 91.95(11) |
| N2-Ni1-O5 | 78.59(11) | O2-Ni1-O1 | 154.83(10) | O5-Ni1-O6 | 155.16(10) |
| N1-Ni1-O5 | 102.20(11) | O5-Ni1-O1 | 91.26(11) | O1-Ni1-O6 | 92.19(11) |
Intermolecular in the complexes, (2–4) hydrogen bonds play important roles in stabilizing the crystal structures. The ranges of the D-H…A angles and those of the H…A and D…A distances indicate the presence of strong and weak hydrogen bondings in the structures 2–4 (Table 3).
Hydrogen bonds for compounds 2–4 (Å, °).
| D-H···A | d(D-H) | d(H···A) | d(D···A) | <D-H···A |
|---|---|---|---|---|
| N3-H3B-O4W | 0.86 | 2.08 | 2.899(12) | 158.1 |
| O1W-H14-O1 | 1.00(16) | 2.17(16) | 3.129(8) | 161(12) |
| O1W-H14-O4 | 1.00(16) | 2.28(15) | 3.093(9) | 138(12) |
| O3W-H32-O2 | 0.72(9) | 2.21(10) | 2.919(9) | 166(10) |
| N4-H4’-O6 | 0.86 | 1.86 | 2.667(2) | 155.1 |
| O2w-H2A-O4 | 0.77(4) | 2.60(4) | 3.260(4) | 146(3) |
| N3-H31-O2W | 0.86 | 2.03 | 2.830(5) | 155.4 |
| N3-H32-O1W | 0.86 | 2.02 | 2.811(6) | 152.0 |
| N4-H4-O6 | 0.86 | 1.89 | 2.627(4) | 142.2 |
| O2W-H2B-O7 | 0.831(10) | 2.50(3) | 3.238(6) | 149(5) |
1H-NMR and 13C-NMR chemical shifts (ppm) with coupling constants and assignments for compound 1.
| H3 | – | C2 | 148 ppm |
| H4 | 7.44 (1H, d) [3JH4-H5 = 8.46 Hz] | C4 | 119 ppm |
| H5 | 7.67 (1H, dxd) [3JH5-H4 = 8.46 Hz, 4JH5-H7 = 1.96 Hz] | C5 | 132 ppm |
| H7 | 8.12 (1H, d) [4JH7-H5 = 1.87 Hz] | C6 | 156 ppm |
| H11 | 7.88 (2H, s) | C7 | 124 ppm |
| H12 | 7.20 (2H, s) | C8 | 137 ppm |
| H13 | – | C9 | 140 ppm |
| H15 | 8.25 (2H, dxd) [3JH15-H16=7.67 Hz, 4JH15-H15’= 1.14 Hz] | C14, C14’ | 167 ppm |
| H16 | 8.18 (1H, d + d) [3JH16-H15/15’=7.70 Hz and 3JH16-H15’/15=7.69 Hz] | C15, C15’ | 128 ppm |
| C16 | 118 ppm | ||
| C17, C17’ | 170 ppm | ||
The inhibition data and Ki values of hCA I and hCA II isozymes for hydratase and esterase activity.
| Hydratase IC50 (μM) | Esterase IC50 (μM) | |||||
|---|---|---|---|---|---|---|
| Compound | hCA I | hCA II | hCA I | hCA II | hCA I | hCA II |
| 0.390 ± 0.008 | 0.200 ± 0.005 | 0.420 ± 0.004 | 0.310 ± 0.008 | 0.260 ± 0.003 | 0.140 ± 0.005 | |
| 30.44 ± 0.008 | 5.670 ± 0.003 | 28.14 ± 0.012 | 5.360 ± 0.005 | 26.32 ± 0.009 | 4.140 ± 0.011 | |
| 7.846 ± 0.005 | 4.334 ± 0.021 | 0.499 ± 0.010 | 0.234 ± 0.006 | 0.268 ± 0.007 | 0.114 ± 0.003 | |
| No inhibition | No inhibition | No inhibition | No inhibition | No inhibition | No inhibition | |
| No inhibition | No inhibition | No inhibition | No inhibition | No inhibition | No inhibition | |
| 6.348 ± 0.012 | 3.876 ± 0.014 | 0.567 ± 0.008 | 0.322 ± 0.006 | 0.306 ± 0.004 | 0.162 ± 0.010 | |
| 4.075 ± 0.018 | 1.998 ± 0.009 | 0.258 ± 0.017 | 0.133 ± 0.015 | 0.149 ± 0.017 | 0.085 ± 0.019 | |
| 2.533 ± 0.023 | 1.009 ± 0.013 | 0.409 ± 0.021 | 0.189 ± 0.005 | 0.192 ± 0.019 | 0.101 ± 0.005 | |
| 1.601 ± 0.008 | 0.703 ± 0.014 | 0.066 ± 0.004 | 0.041 ± 0.003 | 0.028 ± 0.002 | 0.013 ± 0.006 | |
| 0.397 ± 0.011 | 0.212 ± 0.006 | 0.136 ± 0.003 | 0.054 ± 0.001 | 0.043 ± 0.012 | 0.021 ± 0.004 | |
| 1.751 ± 0.013 | 0.887 ± 0.011 | 0.149 ± 0.008 | 0.067 ± 0.008 | 0.068 ± 0.014 | 0.035 ± 0.013 | |
AAZ was used as reference compound.
M = Fe(III), Co(II), and Ni(II).
Mean ± standard error, from three different assays.
p < 0.0001 for all analysis.