| Literature DB >> 28098162 |
Derrek P Hibar1, Hieab H H Adams2,3, Neda Jahanshad1, Ganesh Chauhan4, Jason L Stein1,5, Edith Hofer6,7, Miguel E Renteria8, Joshua C Bis9, Alejandro Arias-Vasquez10,11,12,13, M Kamran Ikram2,14,15,16,17, Sylvane Desrivières18, Meike W Vernooij2,3, Lucija Abramovic19, Saud Alhusaini20,21, Najaf Amin2, Micael Andersson22, Konstantinos Arfanakis23,24,25, Benjamin S Aribisala26,27,28, Nicola J Armstrong29,30, Lavinia Athanasiu31,32, Tomas Axelsson33, Ashley H Beecham34,35, Alexa Beiser36,37,38, Manon Bernard39, Susan H Blanton34,35, Marc M Bohlken19, Marco P Boks19, Janita Bralten10,13, Adam M Brickman40, Owen Carmichael41, M Mallar Chakravarty42,43, Qiang Chen44, Christopher R K Ching1,45, Vincent Chouraki36,38,46, Gabriel Cuellar-Partida8, Fabrice Crivello47, Anouk Den Braber48, Nhat Trung Doan31, Stefan Ehrlich49,50,51, Sudheer Giddaluru52,53, Aaron L Goldman44, Rebecca F Gottesman54, Oliver Grimm55, Michael E Griswold56, Tulio Guadalupe57,58, Boris A Gutman1, Johanna Hass59, Unn K Haukvik31,60, David Hoehn61, Avram J Holmes50,62, Martine Hoogman10,13, Deborah Janowitz63, Tianye Jia18, Kjetil N Jørgensen31,60, Nazanin Karbalai61, Dalia Kasperaviciute64,65, Sungeun Kim66,67,68, Marieke Klein10,13, Bernd Kraemer69, Phil H Lee50,70,71,72,73, David C M Liewald74, Lorna M Lopez74, Michelle Luciano74, Christine Macare18, Andre F Marquand13,75, Mar Matarin64,76, Karen A Mather29, Manuel Mattheisen77,78,79, David R McKay80,81, Yuri Milaneschi82, Susana Muñoz Maniega26,28,74, Kwangsik Nho66,67,68, Allison C Nugent83, Paul Nyquist84, Loes M Olde Loohuis85, Jaap Oosterlaan86, Martina Papmeyer87,88, Lukas Pirpamer6, Benno Pütz61, Adaikalavan Ramasamy76,89,90, Jennifer S Richards12,13,91, Shannon L Risacher66,68, Roberto Roiz-Santiañez92,93, Nanda Rommelse11,13,91, Stefan Ropele6, Emma J Rose94, Natalie A Royle26,28,74,95, Tatjana Rundek96,97, Philipp G Sämann61, Arvin Saremi1, Claudia L Satizabal36,38, Lianne Schmaal98,99,100, Andrew J Schork101,102, Li Shen66,67,68, Jean Shin39, Elena Shumskaya10,13,75, Albert V Smith103,104, Emma Sprooten80,81,105, Lachlan T Strike8,106, Alexander Teumer107, Diana Tordesillas-Gutierrez93,108, Roberto Toro109, Daniah Trabzuni76,110, Stella Trompet111, Dhananjay Vaidya112, Jeroen Van der Grond113, Sven J Van der Lee2, Dennis Van der Meer114, Marjolein M J Van Donkelaar10,13, Kristel R Van Eijk115, Theo G M Van Erp116, Daan Van Rooij12,13,114, Esther Walton49,117, Lars T Westlye32,117, Christopher D Whelan1,21, Beverly G Windham118, Anderson M Winkler80,119, Katharina Wittfeld63,120, Girma Woldehawariat83, Christiane Wolf121, Thomas Wolfers10,13, Lisa R Yanek112, Jingyun Yang24,122, Alex Zijdenbos123, Marcel P Zwiers13,75, Ingrid Agartz31,60,124, Laura Almasy125,126,127, David Ames128,129, Philippe Amouyel46, Ole A Andreassen31,32, Sampath Arepalli130, Amelia A Assareh29, Sandra Barral40, Mark E Bastin26,28,74,95, Diane M Becker112, James T Becker131, David A Bennett24,122, John Blangero125, Hans van Bokhoven10,13, Dorret I Boomsma48, Henry Brodaty29,132, Rachel M Brouwer19, Han G Brunner10,13,133, Randy L Buckner50,134, Jan K Buitelaar12,13,91, Kazima B Bulayeva135, Wiepke Cahn19, Vince D Calhoun136,137, Dara M Cannon83,138, Gianpiero L Cavalleri21, Ching-Yu Cheng14,15,139, Sven Cichon140,141,142, Mark R Cookson130, Aiden Corvin94, Benedicto Crespo-Facorro92,93, Joanne E Curran125, Michael Czisch61, Anders M Dale143,144, Gareth E Davies145, Anton J M De Craen146, Eco J C De Geus48, Philip L De Jager71,147,148,149,150, Greig I De Zubicaray151, Ian J Deary74, Stéphanie Debette4,36,152, Charles DeCarli153, Norman Delanty21,154, Chantal Depondt155, Anita DeStefano37,38, Allissa Dillman130, Srdjan Djurovic52,156, Gary Donohoe157,158, Wayne C Drevets83,159, Ravi Duggirala125, Thomas D Dyer125, Christian Enzinger6, Susanne Erk160, Thomas Espeseth32,117, Iryna O Fedko48, Guillén Fernández12,13, Luigi Ferrucci161, Simon E Fisher13,57, Debra A Fleischman24,162, Ian Ford163, Myriam Fornage164, Tatiana M Foroud68,165, Peter T Fox166, Clyde Francks13,57, Masaki Fukunaga167, J Raphael Gibbs76,130, David C Glahn80,81, Randy L Gollub50,51,71, Harald H H Göring125, Robert C Green71,168, Oliver Gruber69, Vilmundur Gudnason103,104, Sebastian Guelfi76, Asta K Håberg169,170, Narelle K Hansell8,106, John Hardy76, Catharina A Hartman114, Ryota Hashimoto171,172, Katrin Hegenscheid173, Andreas Heinz160, Stephanie Le Hellard52,53, Dena G Hernandez76,130,174, Dirk J Heslenfeld175, Beng-Choon Ho176, Pieter J Hoekstra114, Wolfgang Hoffmann107,120, Albert Hofman177, Florian Holsboer61,178, Georg Homuth177, Norbert Hosten173, Jouke-Jan Hottenga48, Matthew Huentelman179, Hilleke E Hulshoff Pol19, Masashi Ikeda180, Clifford R Jack181, Mark Jenkinson119, Robert Johnson182, Erik G Jönsson31,124, J Wouter Jukema111, René S Kahn19, Ryota Kanai183,184,185, Iwona Kloszewska186, David S Knopman187, Peter Kochunov188, John B Kwok189,190, Stephen M Lawrie87, Hervé Lemaître191, Xinmin Liu83,192, Dan L Longo193, Oscar L Lopez194, Simon Lovestone195,196, Oliver Martinez153, Jean-Luc Martinot191, Venkata S Mattay44,54,197, Colm McDonald138, Andrew M McIntosh74,87, Francis J McMahon83, Katie L McMahon198, Patrizia Mecocci199, Ingrid Melle31,32, Andreas Meyer-Lindenberg55, Sebastian Mohnke160, Grant W Montgomery8, Derek W Morris157, Thomas H Mosley118, Thomas W Mühleisen141,142, Bertram Müller-Myhsok61,200,201, Michael A Nalls130, Matthias Nauck202,203, Thomas E Nichols119,204, Wiro J Niessen3,205,206, Markus M Nöthen141,207, Lars Nyberg22, Kazutaka Ohi171, Rene L Olvera166, Roel A Ophoff19,85, Massimo Pandolfo155, Tomas Paus208,209,210, Zdenka Pausova39,211, Brenda W J H Penninx100, G Bruce Pike212,213, Steven G Potkin116, Bruce M Psaty214, Simone Reppermund29,215, Marcella Rietschel55, Joshua L Roffman50, Nina Romanczuk-Seiferth160, Jerome I Rotter216, Mina Ryten76,89, Ralph L Sacco35,96,97,217, Perminder S Sachdev29,218, Andrew J Saykin66,68,165, Reinhold Schmidt6, Helena Schmidt219, Peter R Schofield189,190, Sigurdur Sigursson103, Andrew Simmons220,221,222, Andrew Singleton130, Sanjay M Sisodiya64, Colin Smith223, Jordan W Smoller50,70,71,72, Hilkka Soininen224,225, Vidar M Steen52,53, David J Stott226, Jessika E Sussmann87, Anbupalam Thalamuthu29, Arthur W Toga227, Bryan J Traynor130, Juan Troncoso228, Magda Tsolaki229, Christophe Tzourio4,230, Andre G Uitterlinden2,231, Maria C Valdés Hernández26,28,74,95, Marcel Van der Brug232, Aad van der Lugt3, Nic J A van der Wee233, Neeltje E M Van Haren19, Dennis van 't Ent48, Marie-Jose Van Tol234, Badri N Vardarajan40, Bruno Vellas235, Dick J Veltman100, Henry Völzke107, Henrik Walter160, Joanna M Wardlaw26,28,74,95, Thomas H Wassink236, Michael E Weale89, Daniel R Weinberger44,237, Michael W Weiner238, Wei Wen29,218, Eric Westman239, Tonya White3,240, Tien Y Wong14,15,139, Clinton B Wright96,97,217, Ronald H Zielke182, Alan B Zonderman241, Nicholas G Martin8, Cornelia M Van Duijn2, Margaret J Wright106,198, W T Longstreth242, Gunter Schumann18, Hans J Grabe63, Barbara Franke10,11,13, Lenore J Launer243, Sarah E Medland8, Sudha Seshadri36,38, Paul M Thompson1, M Arfan Ikram2,3,244.
Abstract
The hippocampal formation is a brain structure integrally involved in episodic memory, spatial navigation, cognition and stress responsiveness. Structural abnormalities in hippocampal volume and shape are found in several common neuropsychiatric disorders. To identify the genetic underpinnings of hippocampal structure here we perform a genome-wide association study (GWAS) of 33,536 individuals and discover six independent loci significantly associated with hippocampal volume, four of them novel. Of the novel loci, three lie within genes (ASTN2, DPP4 and MAST4) and one is found 200 kb upstream of SHH. A hippocampal subfield analysis shows that a locus within the MSRB3 gene shows evidence of a localized effect along the dentate gyrus, subiculum, CA1 and fissure. Further, we show that genetic variants associated with decreased hippocampal volume are also associated with increased risk for Alzheimer's disease (rg=-0.155). Our findings suggest novel biological pathways through which human genetic variation influences hippocampal volume and risk for neuropsychiatric illness.Entities:
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Year: 2017 PMID: 28098162 PMCID: PMC5253632 DOI: 10.1038/ncomms13624
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
Figure 1Common genetic variants associated with hippocampal volume (=26,814 of European ancestry).
A Manhattan plot displays the association P value for each single-nucleotide polymorphism (SNP) in the genome (displayed as –log10 of the P-value). Genome-wide significance is shown for the P=5 × 10−8 threshold (solid line) and also for the suggestive significance threshold of P=1 × 10−6 (dotted line). The most significant SNP within an associated locus is labeled. For the significant loci and age-dependent loci (Chromosome 19) we labeled the nearest gene, which is not necessarily the gene of action.
Genetic variants at six loci were significantly associated with hippocampal volume.
| 12 | 117,323,367 | 4 kb 5′ to | T | C | 0.9160 | −10.418 | 26,814 | 2.06 × 10−25 | |
| 12 | 65,832,468 | Intron of | T | G | 0.8466 | 9.017 | 26,814 | 1.94 × 10−19 | |
| 7 | 155,797,978 | 200 kb 5′ to | C | G | 0.6837 | −6.755 | 24,484 | 1.42 × 10−11 | |
| 9 | 119,247,974 | Intron of | C | G | 0.3590 | 6.645 | 26,700 | 3.04 × 10−11 | |
| 2 | 162,856,148 | Intron of | T | C | 0.5412 | −6.546 | 26,814 | 5.89 × 10−11 | |
| 5 | 66,084,260 | Intron of | T | G | 0.3544 | −5.558 | 26,814 | 2.73 × 10−8 |
The allele frequency (Freq) and effect size (Z-score) are given with reference to Allele 1. Effect sizes are additive effects for each copy of Allele 1 given as a Z-score. Additional validation was attempted in non-European ancestry generalization samples (shown in Supplementary Data 5).
Figure 2Functional annotation within genome-wide significant loci.
For each panel (a–f), zoomed-in Manhattan plots (±400 kb from top SNP) are shown with gene models below (GENCODE version 19). Plots below are zoomed to highlight the genomic region that likely harbors the causal variant(s) (r2>0.8 from the top SNP). Genomic annotations from the Roadmap Epigenomics Consortium53 are displayed to indicate potential functionality (see Methods for detailed track information). Each plot was made using the LocusTrack software55 (see URLs).
Figure 3Analysis of variance explained, functional annotation, and pathway analysis.
LDSCORE regression analysis for different functional annotation26 categories (described further in Finucane et al.26). Plotted values are the proportion of h2g explained divided by the proportion of SNPs in a given functional category. Values are significantly over- or under-represented if they differ significantly from 1. Values are plotted with a standard error calculated with a jackknife in LDSCORE. Evolutionarily conserved regions across mammals significantly contributed to the heritability of hippocampal volume (indicated by **).