| Literature DB >> 28097051 |
Zhiming Dai1,2, Tian Tian1, Meng Wang1, Xinghan Liu1, Shuai Lin1, Pengtao Yang1, Kang Liu1, Yi Zheng1, Peng Xu1, Meng Liu1, Xuewen Yang1, Zhijun Dai1.
Abstract
Previous studies have investigated the association between cytotoxic T-lymphocyte antigen-4 (CTLA-4) polymorphisms and breast cancer susceptibility, but the results remained inconsistent. Therefore, we evaluated the relationship between four common CTLA-4 polymorphisms and breast cancer risk by a meta-analysis, aiming to derive a comprehensive and precise conclusion. We searched EMBASE, Pubmed, Web of Science, CNKI, and Wanfang databases until July 18th, 2016. Finally, ten eligible studies involving 4,544 breast cancer patients and 4,515 cancer-free controls were included; all these studies were from Asia. Odds ratio (OR) and 95% confidence interval (CI) were used to evaluate the breast cancer risk in five genetic models. The results indicated that the CTLA-4 +49A>G (rs231775) polymorphism had a significant association with decreased breast cancer risk in allelic, homozygous, dominant and recessive models. Also, the +6230G>A (rs3087243) polymorphism reduced breast cancer risk especially in the Chinese population under homozygous and recessive models. In contrast, the -1661A>G (rs4553808) polymorphism increased breast cancer risk in allelic, heterozygous and dominant models, whereas -1722 T>C (rs733618) did not relate to breast cancer risk. In conclusion, CTLA-4 polymorphisms significantly associate with breast cancer susceptibility in Asian populations, and different gene loci may have different effects on breast cancer development. Further large-scale studies including multi-racial populations are required to confirm our findings.Entities:
Keywords: Breast cancer; CTLA-4; Meta-analysis; Polymorphism; Susceptibility
Year: 2017 PMID: 28097051 PMCID: PMC5228500 DOI: 10.7717/peerj.2815
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Flow chart of the studies selection.
Characteristics of the studies included in the meta-analysis.
| First author | Year | Country | Ethnicity | Genotyping medthod | Source of control | Total sample size (case/control) | SNP |
|---|---|---|---|---|---|---|---|
| Yu | 2015 | China | Chinese | PCR-RFLP | PB | 376/366 | 1;2;3;4 |
| Minhas | 2014 | India | Indian | PCR-RFLP | PB | 250/250 | 1 |
| Li D | 2012 | China | Chinese | PCR-RFLP | PB | 581/566 | 1;2;3;4 |
| Kong | 2010 | China | Chinese | PCR-RFLP | HB | 315/322 | 4 |
| Sun | 2008a | China | Chinese | PCR-RFLP | PB | 1060/1070 | 1 |
| Sun | 2008b | China | Chinese | PCR-RFLP | PB | 1037/1070 | 1 |
| Li H | 2008 | China | Chinese | PCR-RFLP | HB | 328/327 | 2;3 |
| Wang | 2007 | China | Chinese | PCR-RFLP | PB | 117/148 | 1;2;4 |
| Erfani | 2006 | Iran | Iranian | PCR-CTPP | PB | 283/245 | 3;4 |
| Ghaderi | 2004 | Iran | Iranian | PCR-RFLP | HB | 197/151 | 1 |
Notes.
polymerase chain reaction
restriction fragment length polymorphism
confronting two pairs primers
population based
hospital based
single-nucleotide polymorphism
SNP No.1, +49A>G (rs231775); 2, +6230G>A (rs3087243); 3, −1722T>C (rs733618); 4, −1661A>G (rs4553808).
Genotype distributions and allele frequencies of CTLA-4 polymorphisms in cases and controls.
| Study | Genotype (N) | Allele frequency (N) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | Case | Control | ||||||||||
| Total | AA | AB | BB | Total | AA | AB | BB | A | B | A | B | ||
| +49A>G ( | |||||||||||||
| 376 | 174 | 175 | 27 | 366 | 174 | 157 | 35 | 523 | 229 | 505 | 227 | 0.96 | |
| 250 | 111 | 113 | 26 | 250 | 105 | 121 | 24 | 335 | 165 | 331 | 169 | 0.20 | |
| 576 | 49 | 281 | 246 | 553 | 54 | 243 | 256 | 379 | 773 | 351 | 755 | 0.74 | |
| 1,060 | 101 | 485 | 474 | 1,070 | 65 | 446 | 559 | 660 | 1,406 | 576 | 1,564 | 0.15 | |
| 1,037 | 100 | 455 | 482 | 1,070 | 73 | 451 | 546 | 655 | 1,419 | 597 | 1,543 | 0.12 | |
| 117 | 48 | 59 | 10 | 148 | 55 | 70 | 23 | 155 | 79 | 180 | 116 | 0.93 | |
| 197 | 84 | 104 | 9 | 151 | 60 | 72 | 19 | 272 | 122 | 192 | 110 | 0.72 | |
| +6230G>A ( | |||||||||||||
| 376 | 257 | 110 | 9 | 366 | 252 | 103 | 11 | 624 | 128 | 607 | 125 | 0.90 | |
| 581 | 361 | 197 | 23 | 566 | 361 | 182 | 23 | 919 | 243 | 904 | 228 | 0.99 | |
| 328 | 32 | 124 | 172 | 327 | 20 | 114 | 193 | 188 | 468 | 154 | 500 | 0.57 | |
| 117 | 24 | 47 | 46 | 148 | 18 | 56 | 74 | 95 | 139 | 92 | 204 | 0.16 | |
| −1722T>C ( | |||||||||||||
| 376 | 123 | 186 | 67 | 366 | 137 | 166 | 63 | 432 | 320 | 440 | 292 | 0.30 | |
| 574 | 184 | 276 | 114 | 551 | 207 | 256 | 88 | 644 | 504 | 670 | 432 | 0.55 | |
| 328 | 125 | 163 | 40 | 327 | 111 | 168 | 48 | 413 | 243 | 390 | 264 | 0.22 | |
| 282 | 225 | 54 | 3 | 245 | 204 | 41 | 0 | 504 | 60 | 449 | 41 | 0.15 | |
| −1661A>G ( | |||||||||||||
| 376 | 273 | 91 | 12 | 366 | 281 | 78 | 7 | 637 | 115 | 640 | 92 | 0.56 | |
| 574 | 405 | 153 | 16 | 551 | 425 | 115 | 11 | 963 | 185 | 965 | 137 | 0.33 | |
| 315 | 204 | 105 | 6 | 322 | 241 | 76 | 5 | 513 | 117 | 558 | 86 | 0.72 | |
| 109 | 62 | 45 | 2 | 148 | 111 | 35 | 2 | 169 | 49 | 257 | 39 | 0.68 | |
| 282 | 211 | 65 | 6 | 238 | 184 | 43 | 11 | 487 | 77 | 411 | 65 | 0.001 | |
Notes.
the major allele
the minor allele
Hardy-Weinberg equilibrium
Meta-analysis results of CTLA-4 polymorphisms and BC risk.
| SNP | B | BB | AB | BB | AB + BB | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| OR (95%CI) | OR (95%CI) | OR (95%CI) | OR (95%CI) | OR (95%CI) | ||||||
| +49A>G ( | ||||||||||
| Overall | 0.86 (0.80–0.92) | 0.68 (0.57–0.81) | 0.92 (0.80–1.06) | 0.23 | 0.79 (0.71–0.87) | 0.85 (0.74–0.97) | ||||
| Chinese | 0.85 (0.79–0.92) | 0.68 (0.56–0.82) | 0.92 (0.73–1.16) | 0.49 | 0.79 (0.71–0.88) | 0.84 (0.65–1.08) | 0.17 | |||
| PB | 0.86 (0.80–0.93) | 0.70 (0.59–0.84) | 0.91 (0.78–1.05) | 0.19 | 0.80 (0.72–0.89) | 0.85 (0.69–1.04) | 0.12 | |||
| +6230G>A ( | ||||||||||
| Chinese | 0.87 (0.71–1.07) | 0.20 | 0.68 (0.49–0.95) | 0.99 (0.83–1.19) | 0.94 | 0.77 (0.61–0.97) | 0.87 (0.65–1.17) | 0.36 | ||
| PB | 0.91 (0.71–1.17) | 0.48 | 0.75 (0.50–1.12) | 0.15 | 1.03 (0.85–1.25) | 0.76 | 0.77 (0.54–1.09) | 0.14 | 1.00 (0.82–1.20) | 0.99 |
| −1722T>C (rs733618) | ||||||||||
| Overall | 1.09 (0.93–1.29) | 0.29 | 1.15 (0.79–1.68) | 0.47 | 1.13 (0.96–1.32) | 0.15 | 1.11 (0.90–1.37) | 0.32 | 1.14 (0.98–1.33) | 0.09 |
| Chinese | 1.07 (0.88–1.29) | 0.51 | 1.12 (0.77–1.63) | 0.55 | 1.12 (0.94–1.33) | 0.22 | 1.10 (0.89–1.35) | 0.39 | 1.11 (0.86–1.43) | 0.43 |
| PB | 1.19 (1.05–1.34) | 1.37 (1.05–1.78) | 1.22 (1.02–1.47) | 1.21 (0.96–1.54) | 0.11 | 1.26 (1.06–1.50) | ||||
| −1661A>G ( | ||||||||||
| Overall | 1.34 (1.16–1.53) | 1.22 (0.78–1.92) | 0.38 | 1.45 (1.23–1.70) | 1.12 (0.72–1.76) | 0.61 | 1.43 (1.22–1.67) | |||
| Chinese | 1.41 (1.21–1.63) | 1.59 (0.95–2.67) | 0.08 | 1.47 (1.24–1.75) | 1.45 (0.86–2.43) | 0.16 | 1.48 (1.25–1.75) | |||
| PB | 1.30 (1.11–1.52) | 1.19 (0.73–1.94) | 0.48 | 1.40 (1.17–1.68) | 1.11 (0.68–1.80) | 0.68 | 1.38 (1.16–1.64) | |||
| HWE | 1.41 (1.21–1.63) | 1.59 (0.95–2.67) | 0.08 | 1.47 (1.24–1.75) | 1.45 (0.86–2.43) | 0.16 | 1.48 (1.25–1.75) | |||
Notes.
the major allele
the minor allele
confidence interval
odds ratio
population based
hospital based
single-nucleotide polymorphism
subgroup excluding the study departing from HWE
Figure 2Forest plots of CTLA-4 polymorphisms and breast cancer risk.
(A) rs231775 under G vs. A; (B) rs3087243) under AA vs. GG; (C) rs4553808 under AG + GG vs. AA. The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of the variance). The diamond represents the summary OR and 95% CI.
Heterogeneity-analysis results of CTLA-4 polymorphisms and BC risk.
| SNP | B | BB | AB | BB | AB + BB | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EM | EM | EM | EM | EM | |||||||||||
| +49A>G ( | |||||||||||||||
| Overall | 0% | 0.46 | F | 45% | 0.09 | F | 29% | 0.21 | F | 27% | 0.22 | F | 41% | 0.12 | F |
| Chinese | 12% | 0.34 | F | 40% | 0.15 | F | 51% | 0.09 | R | 0% | 0.59 | F | 60% | 0.04 | R |
| PB | 6% | 0.38 | F | 39% | 0.14 | F | 39% | 0.15 | F | 0% | 0.56 | F | 51% | 0.07 | R |
| +6230G>A ( | |||||||||||||||
| Chinese | 58% | 0.07 | R | 8% | 0.36 | F | 0% | 0.38 | F | 0% | 0.78 | F | 53% | 0.09 | R |
| PB | 60% | 0.08 | R | 24% | 0.27 | F | 16% | 0.31 | F | 0% | 0.58 | F | 46% | 0.16 | F |
| −1722T>C ( | |||||||||||||||
| Overall | 52% | 0.10 | R | 51% | 0.10 | R | 7% | 0.36 | F | 35% | 0.22 | F | 39% | 0.18 | F |
| Chinese | 64% | 0.06 | R | 59% | 0.09 | R | 37% | 0.21 | F | 31% | 0.23 | F | 57% | 0.10 | R |
| PB | 0% | 0.74 | F | 0% | 0.45 | F | 0% | 0.99 | F | 0% | 0.37 | F | 0% | 0.98 | F |
| −1661A>G ( | |||||||||||||||
| Overall | 27% | 0.24 | F | 9% | 0.35 | F | 14% | 0.32 | F | 6% | 0.37 | F | 24% | 0.26 | F |
| Chinese | 0% | 0.48 | F | 0% | 0.99 | F | 32% | 0.22 | F | 0% | 0.98 | F | 24% | 0.27 | F |
| PB | 39% | 0.18 | F | 31% | 0.23 | F | 27% | 0.25 | F | 30% | 0.24 | F | 34% | 0.21 | F |
| HWE | 0% | 0.48 | F | 0% | 0.99 | F | 32% | 0.22 | F | 0% | 0.98 | F | 24% | 0.27 | F |
Notes.
Effects model
fixed effects model
random effects model
population based
hospital based
single-nucleotide polymorphism
subgroup excluding the study departing from HWE
Figure 3Sensitivity analysis of CTLA-4 polymorphisms and breast cancer risk.
(A) rs231775 under G vs. A; (B) rs3087243 under AA vs. GG + GA; (C) rs733618 under TC vs. TT; (D) rs4553808 under G vs. A. Each point represents the pooled OR after omitting single study in left column. The two ends of the dotted lines represent the 95% CI.
Figure 4Begg’s funnel plots of publication bias for the association of CTLA-4 polymorphisms and breast cancer risk.
(A) rs231775, (B) rs3087243, (C) rs733618, (D) rs4553808 under the allelic model. Each point represents a single study for the indicated association.
Egger’s test result of CTLA-4 polymorphisms and BC risk based on allele frequency.
| SNP | Coefficient | SE | 95% CI | ||
|---|---|---|---|---|---|
|
| 0.71 | 1.13 | 0.63 | 0.557 | −2.19–3.61 |
|
| −5.19 | 3.20 | −1.62 | 0.246 | −18.94–0.56 |
|
| −0.03 | 3.17 | −0.01 | 0.993 | −13.67–13.61 |
|
| 1.26 | 2.82 | 0.45 | 0.686 | −7.70–10.21 |
Notes.
single-nucleotide polymorphism
95% confidence interval
standard error