| Literature DB >> 28095893 |
Mina Yang1, Sung Yun Cho2, Hyung-Doo Park3, Rihwa Choi1, Young-Eun Kim1, Jinsup Kim2, Soo-Youn Lee1, Chang-Seok Ki1, Jong-Won Kim1, Young Bae Sohn4, Junghan Song5, Dong-Kyu Jin6.
Abstract
BACKGROUND: Mucolipidosis types II and III (ML II/III) are autosomal recessive disorders caused by a deficiency in the lysosomal enzyme N-acetylglucosamine-1-phosphotransferase. We investigated the molecular genetic characteristics of the GNPTAB gene, which codes for the alpha/beta subunits of a phosphotransferase, in Korean ML II/III patients. We included prenatal tests and evaluated the spectrum of mutations in East Asian populations with ML II/III through a literature review.Entities:
Keywords: GNPTAB; Lysosomal storage disease; Mucolipidosis; Prenatal diagnosis
Mesh:
Substances:
Year: 2017 PMID: 28095893 PMCID: PMC5240260 DOI: 10.1186/s13023-016-0556-2
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Sequences of Primers Used for PCR amplification and Sequencing of GNPTAB
| Exon | Primers |
|---|---|
| 1 | F: ctatgcccctccgtcctc |
| R: gctcaggagttcgagaccag | |
| 2 | F: ttgtccttttcaggaactgtagc |
| R: cacaggggccacactaatct | |
| 3 | F: cccccagctacagtttgaa |
| R: acctccacctcccaaagttc | |
| 4 | F: ggccaccttatattggagca |
| R: actctaaccctccccagtgc | |
| 5 | F: tccatgagataaaagtcttcatttg |
| R: gcagctgttttgcttctcttt | |
| 6 | F: tcccatgaagaattcccttt |
| R: gcatcacaacacaagcttcaa | |
| 7 | F: gctgtttttctttgagaatcttttt |
| R: aaggagtgaggctcttctgg | |
| 8 | F: ggaggttgaggtgagcagag |
| R: taccaaaccaatggcagtga | |
| 9 | F: aatgctgtctctttgaattttgg |
| R: gagagctgtttgggtttggt | |
| 10 | F: ccctttacccttctacctcca |
| R: tatgcttcccaagctggtct | |
| 11 | F: tcaacgcagcaggatctaaa |
| R: actcctcccagctcagcttt | |
| 12 | F: tgatccagcctcctctgc |
| R: cctcttcagtgatttatgttgttctc | |
| 13_1 | F: cacaaggacgacatgcaaat |
| R: cgtaacccttctgggctgta | |
| 13_2 | F: tgatccttctcccaaaccag |
| R: tgatctcagcaaggctgact | |
| 13_3 | F: aggcggaaatcctttttgag |
| R: aatcagagatgggggctttt | |
| 13_4 | F: gctccacaggaaaaacaggt |
| R: aaatgaaaccatgtaagaaaagca | |
| 14 | F: tgacccgttaacatgtatttca |
| R: catttgcagagatggacttttt | |
| 15 | F: tgctcgtgtttgagttgtttg |
| R: ggttggtctcgaactcctga | |
| 16 | F: ttggcattgtctcattctgc |
| R: ttacgcatctatggggtgaa | |
| 17 | F: ggtttggtttgtgaaaaatgc |
| R: ccgtagtggactcaacatcca | |
| 18 | F: aatcacaaaggtctggcttttt |
| R: atgggggaccctatctcaac | |
| 19 | F: tcattcccccagagaatcat |
| R: aggttgcagtgagctgaggt | |
| 20 | F: cctctctcctgcctggataa |
| R: tgctgcctgaatattgtgaaa | |
| 21 | F: ttttggaagaggaatgatgga |
| R: aggatgacaggtccatgagc |
Clinical characteristics and GNPTAB mutations in seven patients with ML II/III
| Case no. | Phenotype | Age at Dx. (month) | Sex | Symptoms at diagnosis | Nucleotide change | Amino acid change |
|---|---|---|---|---|---|---|
| 1 | III | 3.10 | M | growth retardation, joint contracture, developmental delay | c.992A > G | p.Tyr331Cys |
| 2 | II | 0.5 | F | developmental delay, synostosis, puffy face | c.1090C > T | p.Arg364* |
| 3a | NA | NA | F | normal, prior affected sibling | c.2681G > A | p.Trp894* |
| 4a | NA | NA | F | normal, prior affected sibling | c.310C > T | p.Gln104* |
| 5 | III | 7.3 | F | mental retardation, asymmetric chest, joint contracture, | c.637-6 T > G | p.Thr213Phefs*11 |
| 6 | III | 6.3 | F | joint contracture | c.637-6 T > G | p.Thr213Phefs*11 |
| 7 | II | 1.8 | F | growth retardation, joint contracture, puffy face, hepatosplenomegaly | c.471_472delTT | p.Tyr158Serfs*8 |
aPrenatal test, Dx diagnosis, NA not applicable
Fig. 1Radiographs of 21-month-old Korean girl with ML II. a Radiograph of hands and wrists showing broad and under-modelled proximal phalanges (bullet-shaped) and proximal pointing of metacarpals. b Radiograph of pelvis and proximal femurs showing dysplasia/resorption of the lower third of the ilia femoral heads and femoral necks and e. Clierd’s crook deformity.” c Radiograph of spine showing thoracolumbar kyphosis and beaking of the vertebrae. d Radiograph of skull showing J-shaped sella turcica
Fig. 2Radiographs of 19-year-old Korean female with ML III. a Radiograph of hands and wrists showing claw hands: impossible flexion and maximum extension without objective skin thickening or joint involvement. Small and irregular carpal bones and wide proximal phalanges are noted. b Radiograph of spine showing irregularity of the vertebral end plates. c Radiograph of pelvis showing flattened acetabulum and femoral head deformity
Lysosomal enzyme activities in patients with ML II/III
| Case no. | Reference range | Reference range a | |||||
|---|---|---|---|---|---|---|---|
| 1 | 2 | 5a | 6a | 7 | (nmol/hr/mg) | (nmol/min/mL) | |
| Arylsulfatase A | |||||||
| Plasma | 847 | 312 | 42 | 43 | 2228 | NA | 0.1–1.6 |
| Leukocyte | 66 | 26 | NA | NA | 38 | 25–80 | NA |
| α-N-Acetylglucosaminidase | |||||||
| Plasma | 234 | NA | 9 | NA | NA | 22.3–60.9 | 0.1–0.6 |
| Leukocyte | 0.93 | NA | NA | NA | NA | 0.90–1.51 | NA |
| β-Hexosaminidase | |||||||
| Plasma | 4520 | 12247 | 14 | 13 | 8196 | 374–666 | 0.5–3.1 |
| Leukocyte | 728 | 482 | NA | NA | 358 | 611–991 | NA |
| β-Glucosidase | |||||||
| Plasma | 0.7 | 0.4 | NA | NA | 0.86 | NA | NA |
| Leukocyte | 7.0 | 9.2 | NA | NA | 8.3 | 5.1–11.32 | NA |
| β-Glucuronidase | |||||||
| Plasma | NA | NA | 18 | 19 | NA | NA | 0.1–2.0 |
| Leukocyte | NA | NA | NA | NA | NA | NA | NA |
NA not available; aperformed at outside hospital
Fig. 3Molecular effects of the c.637-6 T > G mutation. a A schematic representation and cDNA sequence from case 6. b The predicted amino acid sequence (inserted nucleotides are shaded)
GNPTAB mutations in 13 Korean patients with ML II/III
| Mutation type | Exon no. | Nucleotide change | Amino acid change | No. of alleles | Reference |
|---|---|---|---|---|---|
| Missense | 9 | c.992A > G | p.Tyr331Cys | 1 | This study |
| Nonsense | 3 | c.310C > T | p.Gln104* | 2 | [ |
| Nonsense | 9 | c.1071G > A | p.Trp357* | 1 | This study |
| Nonsense | 9 | c.1090C > T | p.Arg364* | 1 | This study |
| Nonsense | 13 | c.2666 T > A | p.Leu889* | 1 | This study |
| Nonsense | 13 | c.2681G > A | p.Trp894* | 2 | [ |
| Nonsense | 15 | c.3091C > T | p.Arg1031* | 1 | [ |
| Nonsense | 16 | c.3173C > G | p.Ser1058* | 1 | [ |
| Nonsense | 19 | c.3565C > T | p.Arg1189* | 5 | [ |
| Frameshift | 5 | C.471_472delTT | p.Tyr158Serfs*8 | 1 | This study |
| Frameshift | 13 | c.2189delT | p.Leu730fs*7 | 1 | This study |
| Frameshift | 13 | c.2574_2575delGA | p.Asn859Glnfs*2 | 3 | [ |
| Frameshift | 19 | c.3456_3459dupCAAC | p.Ile1154Glnfs*3 | 1 | [ |
| Frameshift | 19 | c.3474_3475delTA | p.His1158fs*15 | 1 | [ |
| Splicing | IVS6 | c.637-6 T > G | p.Thr213Phefs*11 | 2 | This study |
| Splicing | IVS13 | c.2715 + 1G > A | - | 2 | [ |
Summary of all reported GNPTAB mutations in East Asian patients with ML II/III
| Mutation type | Nucleotide change | Amino acid change | Exon no. | Reference | Allele frequency | Ethnicity |
|---|---|---|---|---|---|---|
| Missense | c.992A > G | p.Tyr331Cys | 9 | This study | 0.9% (1/120) | KOR |
| Missense | c.1001G > T | p.Arg334Leu | 9 | [ | 0.9% (1/120) | JPN |
| Missense | c.1120 T > C | p.Phe374Leu | 10 | [ | 6.7% (8/120) | JPN |
| Missense | c.2866C > T | p.His956Tyr | 14 | [ | 1.8% (2/120) | JPN |
| Missense | c.3458A > G | p.Asn1153Ser | 19 | [ | 0.9% (1/120) | JPN |
| Nonsense | c.310C > T | p.Gln104* | 3 | [ | 5.3% (6/120) | KOR, JPN |
| Nonsense | c.1071G > A | p.Trp357* | 9 | [ | 2.7% (3/120) | KOR, CHN |
| Nonsense | c.1090C > T | p.Arg364* | 9 | [ | 5.9% (7/120) | KOR, CHN |
| Nonsense | c.2666 T > A | p.Leu889* | 13 | This study | 0.9% (1/120) | KOR |
| Nonsense | c.2681G > A | p.Trp894* | 13 | [ | 3.4% (4/120) | KOR, JPN |
| Nonsense | c.3091C > T | p.Arg1031* | 15 | [ | 0.9% (1/120) | KOR |
| Nonsense | c.3173C > G | p.Ser1058* | 16 | [ | 0.9% (1/120) | KOR |
| Nonsense | c.3565C > T | p.Arg1189* | 19 | [ | 32.5% (39/120) | KOR, JPN, CHN |
| Frameshift | c.471_472delTT | p.Tyr158Serfs*8 | 5 | This study | 0.9% (1/120) | KOR |
| Frameshift | c.914_915insA | p.Asp305fs | 8 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.2089_2090insC | p.Leu697fs | 13 | [ | 1.8% (2/120) | JPN |
| Frameshift | c.2189delT | p.Leu730fs*7 | 13 | This study | 0.9% (1/120) | KOR |
| Frameshift | c.2422delC | p.Leu808fs*19 | 13 | [ | 0.9% (1/120) | CHN |
| Frameshift | c.2427delC | p.Leu810fs | 13 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.2544delA | p.Lys848fs | 13 | [ | 1.8% (4/120) | JPN |
| Frameshift | c.2574_2575delGA | p.Asn859Glnfs*2 | 13 | [ | 2.5% (3/120) | KOR |
| Frameshift | c.2693delA | p.Lys898fs | 13 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.3310delG | p.Ala1104fs | 17 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.3388_3389insC + c.3390C > T | p.Val1130fs | 18 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.3428_3429insA | p.Asn1143fs | 18 | [ | 0.9% (1/120) | JPN |
| Frameshift | c.3456_3459dupCAAC | p.Ile1154Glnfs*3 | 19 | [ | 0.9% (1/120) | KOR |
| Frameshift | c.3474_3475delTA | p.His1158fs*15 | 19 | [ | 0.9% (1/120) | KOR |
| Frameshift | c.3741_3744delAGAA | p.Glu1248fs | 21 | [ | 0.9% (1/120) | JPN |
| Frameshift | duplication exon2 | Frameshift | 2 | [ | 5.0% (6/120) | JPN |
| Splicing | c.637-6 T > G | p.Thr213Phefs*11 | IVS6 | This study | 1.8% (2/120) | KOR |
| Splicing | c.2715 + 1G > A | - | IVS13 | [ | 7.5% (9/120) | KOR, JPN, CHN |
CHN Chinese, JPN Japanese, KOR Korean
Fig. 4Evolutionary conservation of the amino acid residues of a novel missense, likely pathogenic variant. The affected residue, Tyr331, is strictly conserved in various mammals and zebrafish
Fig. 5Summary of the reported GNPTAB mutation spectrum: a GNPTAB mutation types among all reported mutations in all ethnic populations, b GNPTAB mutation types identified in East Asian ML II/III patients other than Koreans, c GNPTAB mutation types identified in Korean ML II/III patients