Literature DB >> 28094451

Development of Diversity Arrays Technology markers as a tool for rapid genomic assessment in Nile tilapia, Oreochromis niloticus.

C E Lind1, A Kilian2, J A H Benzie1,3.   

Abstract

The development of genomic markers is described for Nile tilapia, Oreochromis niloticus, using the Diversity Arrays Technology (DArT) genotype-by-sequencing platform. A total of 13 215 single nucleotide polymorphism (SNP) markers and 12 490 silicoDArT (dominant) markers were identified from broodstock of two selective breeding programs [Genetically Improved Farmed Tilapia (GIFT) strain from Malaysia and the Abbassa strain from Egypt]. Over 10 000 SNPs were polymorphic in either strain, and 2985 and 3087 showed strain-specific polymorphisms for the GIFT and Abbassa strains respectively. We demonstrate the potential utility of these markers for rapid genomic screening and use in breeding programs.
© 2017 Stichting International Foundation for Animal Genetics.

Entities:  

Keywords:  zzm321990SNPzzm321990; DArTseq; aquaculture; genetically improved farmed tilapia; genotype-by-sequencing

Mesh：

Substances：

Year:  2017        PMID： 28094451     DOI： 10.1111/age.12536

Source DB:  PubMed          Journal:  Anim Genet        ISSN： 0268-9146            Impact factor:   3.169


  9 in total

1.  The Significance of PCR Primer Design in Genetic Diversity Studies: Exemplified by Recent Research into the Genetic Structure of Marine Species.

Authors:  Madjid Delghandi; Marit Pedersen Delghandi; Stephen Goddard
Journal:  Methods Mol Biol       Date:  2022

2.  Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline.

Authors:  Rufaida Dhuhai Al-Breiki; Shannon R Kjeldsen; Hasifa Afzal; Manal Saif Al Hinai; Kyall R Zenger; Dean R Jerry; Mohammed Ali Al-Abri; Madjid Delghandi
Journal:  BMC Genomics       Date:  2018-09-19       Impact factor: 3.969

3.  Genetic diversity of Nile tilapia (Oreochromis niloticus) throughout West Africa.

Authors:  Curtis E Lind; Seth K Agyakwah; Felix Y Attipoe; Christopher Nugent; Richard P M A Crooijmans; Aboubacar Toguyeni
Journal:  Sci Rep       Date:  2019-11-14       Impact factor: 4.379

4.  Infection dynamics, dispersal, and adaptation: understanding the lack of recovery in a remnant frog population following a disease outbreak.

Authors:  Donald T McKnight; Leah J Carr; Deborah S Bower; Lin Schwarzkopf; Ross A Alford; Kyall R Zenger
Journal:  Heredity (Edinb)       Date:  2020-06-01       Impact factor: 3.821

5.  Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments.

Authors:  Shannon R Kjeldsen; Herman W Raadsma; Kellie A Leigh; Jennifer R Tobey; David Phalen; Andrew Krockenberger; William A Ellis; Emily Hynes; Damien P Higgins; Kyall R Zenger
Journal:  Heredity (Edinb)       Date:  2018-09-12       Impact factor: 3.821

6.  Development and Validation of an Open Access SNP Array for Nile Tilapia (Oreochromis niloticus).

Authors:  Carolina Peñaloza; Diego Robledo; Agustin Barría; Trọng Quốc Trịnh; Mahirah Mahmuddin; Pamela Wiener; John A H Benzie; Ross D Houston
Journal:  G3 (Bethesda)       Date:  2020-08-05       Impact factor: 3.154

7.  Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs.

Authors:  Jarrod L Guppy; David B Jones; Shannon R Kjeldsen; Agnes Le Port; Mehar S Khatkar; Nicholas M Wade; Melony J Sellars; Eike J Steinig; Herman W Raadsma; Dean R Jerry; Kyall R Zenger
Journal:  BMC Genomics       Date:  2020-08-05       Impact factor: 3.969

8.  Comparing Genomic Signatures of Selection Between the Abbassa Strain and Eight Wild Populations of Nile Tilapia (Oreochromis niloticus) in Egypt.

Authors:  Maria G Nayfa; David B Jones; John A H Benzie; Dean R Jerry; Kyall R Zenger
Journal:  Front Genet       Date:  2020-10-15       Impact factor: 4.599

9.  Identification of Genes Related to Cold Tolerance and Novel Genetic Markers for Molecular Breeding in Taiwan Tilapia (Oreochromis spp.) via Transcriptome Analysis.

Authors:  Pei-Yun Chu; Jia-Xian Li; Te-Hua Hsu; Hong-Yi Gong; Chung-Yen Lin; Jung-Hua Wang; Chang-Wen Huang
Journal:  Animals (Basel)       Date:  2021-12-13       Impact factor: 2.752
  9 in total

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