Literature DB >> 28094093

AChiralPentagonalPolyhedralFramework forCharacterizingVirusCapsidStructures.

Aditya Raguram1, V Sasisekharan2, Ram Sasisekharan3.   

Abstract

Recent developments of rational strategies for the design of antiviral therapies, including monoclonal antibodies (mAbs), have naturally relied extensively on available viral structural information. As new strategies continue to be developed, it is equally important to continue to refine our understanding and interpretation of viral structural data. There are known limitations to the traditional (Caspar-Klug) theory for describing virus capsid structures that involves subdividing a capsid into triangular subunits. In this context, we describe a more general polyhedral framework for describing virus capsid structures that is able to account for many of these limitations, including a more thorough characterization of intersubunit interfaces. Additionally, our use of pentagonal subunits instead of triangular ones accounts for the intrinsic chirality observed in all capsids. In conjunction with the existing theory, the framework presented here provides a more complete picture of a capsid's structure and therefore can help contribute to the development of more effective antiviral strategies.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  pentagon; polyhedral; structure; virus

Mesh:

Substances:

Year:  2017        PMID: 28094093      PMCID: PMC5438269          DOI: 10.1016/j.tim.2016.12.007

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  32 in total

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Authors:  R Twarock
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2.  STRUCTURE OF VIRUSES OF THE PAPILLOMA-POLYOMA TYPE. I. HUMAN WART VIRUS.

Authors:  A KLUG; J T FINCH
Journal:  J Mol Biol       Date:  1965-02       Impact factor: 5.469

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Authors:  F H CRICK; J D WATSON
Journal:  Nature       Date:  1956-03-10       Impact factor: 49.962

4.  L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism.

Authors:  Hisashi Naitow; Jinghua Tang; Mary Canady; Reed B Wickner; John E Johnson
Journal:  Nat Struct Biol       Date:  2002-10

5.  Tilable nature of virus capsids and the role of topological constraints in natural capsid design.

Authors:  Ranjan V Mannige; Charles L Brooks
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-05-01

6.  Structure-Guided Design of an Anti-dengue Antibody Directed to a Non-immunodominant Epitope.

Authors:  Luke N Robinson; Kannan Tharakaraman; Kirk J Rowley; Vivian V Costa; Kuan Rong Chan; Yee Hwa Wong; Li Ching Ong; Hwee Cheng Tan; Tyree Koch; David Cain; Rama Kirloskar; Karthik Viswanathan; Chong Wai Liew; Hamid Tissire; Boopathy Ramakrishnan; James R Myette; Gregory J Babcock; V Sasisekharan; Sylvie Alonso; Jianzhu Chen; Julien Lescar; Zachary Shriver; Eng Eong Ooi; Ram Sasisekharan
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

Review 7.  The Interplay of Dengue Virus Morphological Diversity and Human Antibodies.

Authors:  Shee-Mei Lok
Journal:  Trends Microbiol       Date:  2015-12-30       Impact factor: 17.079

8.  DENGUE VIRUS. Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.

Authors:  Guntur Fibriansah; Kristie D Ibarra; Thiam-Seng Ng; Scott A Smith; Joanne L Tan; Xin-Ni Lim; Justin S G Ooi; Victor A Kostyuchenko; Jiaqi Wang; Aravinda M de Silva; Eva Harris; James E Crowe; Shee-Mei Lok
Journal:  Science       Date:  2015-07-03       Impact factor: 47.728

Review 9.  Computer-aided antibody design.

Authors:  Daisuke Kuroda; Hiroki Shirai; Matthew P Jacobson; Haruki Nakamura
Journal:  Protein Eng Des Sel       Date:  2012-06-02       Impact factor: 1.650

Review 10.  Principles of virus structural organization.

Authors:  B V Venkataram Prasad; Michael F Schmid
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

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  1 in total

Review 1.  In vitro methods for testing antiviral drugs.

Authors:  Michaela Rumlová; Tomáš Ruml
Journal:  Biotechnol Adv       Date:  2017-12-29       Impact factor: 14.227

  1 in total

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