Literature DB >> 28093779

Reaching multi-nanosecond timescales in combined QM/MM molecular dynamics simulations through parallel horsetail sampling.

Marilia T C Martins-Costa1, Manuel F Ruiz-López1.   

Abstract

We report an enhanced sampling technique that allows to reach the multi-nanosecond timescale in quantum mechanics/molecular mechanics molecular dynamics simulations. The proposed technique, called horsetail sampling, is a specific type of multiple molecular dynamics approach exhibiting high parallel efficiency. It couples a main simulation with a large number of shorter trajectories launched on independent processors at periodic time intervals. The technique is applied to study hydrogen peroxide at the water liquid-vapor interface, a system of considerable atmospheric relevance. A total simulation time of a little more than 6 ns has been attained for a total CPU time of 5.1 years representing only about 20 days of wall-clock time. The discussion of the results highlights the strong influence of the solvation effects at the interface on the structure and the electronic properties of the solute.
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  QM/MM simulations; aqueous interfaces; hydrogen peroxide; multiple molecular dynamics; sampling techniques

Year:  2017        PMID: 28093779     DOI: 10.1002/jcc.24723

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

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4.  Tight electrostatic regulation of the OH production rate from the photolysis of hydrogen peroxide adsorbed on surfaces.

Authors:  Manuel F Ruiz-López; Marilia T C Martins-Costa; Joseph S Francisco; Josep M Anglada
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

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  5 in total

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