| Literature DB >> 28093779 |
Marilia T C Martins-Costa1, Manuel F Ruiz-López1.
Abstract
We report an enhanced sampling technique that allows to reach the multi-nanosecond timescale in quantum mechanics/molecular mechanics molecular dynamics simulations. The proposed technique, called horsetail sampling, is a specific type of multiple molecular dynamics approach exhibiting high parallel efficiency. It couples a main simulation with a large number of shorter trajectories launched on independent processors at periodic time intervals. The technique is applied to study hydrogen peroxide at the water liquid-vapor interface, a system of considerable atmospheric relevance. A total simulation time of a little more than 6 ns has been attained for a total CPU time of 5.1 years representing only about 20 days of wall-clock time. The discussion of the results highlights the strong influence of the solvation effects at the interface on the structure and the electronic properties of the solute.Entities:
Keywords: QM/MM simulations; aqueous interfaces; hydrogen peroxide; multiple molecular dynamics; sampling techniques
Year: 2017 PMID: 28093779 DOI: 10.1002/jcc.24723
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376