| Literature DB >> 28088184 |
Dipanwita Das1, Isha Sengupta2, Neelakshi Sarkar1, Ananya Pal1, Debraj Saha1, Manikankana Bandopadhyay1, Chandrima Das2, Jimmy Narayan3, Shivaram Prasad Singh3,4, Sekhar Chakrabarti1,5, Runu Chakravarty6.
Abstract
BACKGROUND: Toll like receptors (TLRs) play an important role in innate immunity and various studies suggest that TLRs play a crucial role in pathogenesis of hepatitis B virus (HBV) infection. The present study aims in looking into the status of crucial host and viral gene expression on inciting TLR7.Entities:
Keywords: Cell-cycle arrest; Epigenetics; Hepatitis B virus; Innate immune response; TLR7
Mesh:
Substances:
Year: 2017 PMID: 28088184 PMCID: PMC5237519 DOI: 10.1186/s12879-017-2189-z
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
List of primer sequences used for RT-PCR analysis
| Gene | FORWARD PRIMER | REVERSE PRIMER |
|---|---|---|
| IRAK 1 | 5'-ACCGCAGATTATCATCAACC-3' | 5'-AGACTTACAGCCATACTTCACT-3' |
| IRAK 4 | 5'-GCTGTATGTAGGGTGGAAAC-3’ | 5'-TGCTGACAACTGGAAGGTAG-3' |
| TRAF6 | 5'-GCCCAGGCTGTTCATAGTTT-3' | 5'-CAAGGGAGGTGGCTGTCATA-3' |
| p53 | 5’-CCCAAGCAATGGATGATTTGA-3’ | 5’-GGCATTCTGGGAGCTTCATCT-3’ |
| CYCLIN D1 | 5’-AGCTCCTGTGCTGCGAAGTGGAAAC-3’ | 5’-AGTGTTCAATGAAATCGTGCGGGGT-3’ |
| CYCLIN E | 5’-CAGCACTTTCT TG AGCAACACCCTC-3’ | 5’-TCTCTAT GTCGCACCACTGATACCC-3’ |
| CYCLIN B1 | 5’-AAGAGCTTTAAACTTTGGTCTGGG-3’ | 5’-CTTTGTAAGTCCTTGATTTACCATG-3’ |
| CYCLIN A | 5’GCATGTCACCGTTCCTCCTT-3’ | 5’CAGGGCATCTTCACGCTCTAT-3’ |
| JNK | 5'- GTACTTGTATGAAACCACCTTTCT -3' | 5'- AGCATCTCTTTCTGAATCTATGAAG -3' |
| PI3KCA | 5'- AAGGGTGCTAAAGAGGAACAC -3’ | 5'-CATGAGGTACTGGCCAAAGAT -3' |
| PI3KCB | 5'- CTCCAAATGTTGCGCTTGATG -3' | 5'- ACAACTTCAATGAGGCCAGAG -3' |
| PI3KCG | 5’- CACCGAGACAGGAAACCTATTT -3’ | 5’- TAGCACAAATGGCACTCTCTC -3’ |
| NF-КB | 5’-CGCATCCAGACCAACAACA-3’ | 5’- TGCCAGAGTTTCGGTTCAC-3’ |
| p38 | 5’- TCTGCTTACCCTTCACCTTTG -3’ | 5’- CACATCCTCACTCTGCTAGAAAT -3’ |
| c-jun | 5’-CAAAGTTTGGATTGCATCAATG-3’ | 5’- TAACATTATAAATGGTCACAGCACATG-3’ |
| c-myc | 5’-CTTCTCTCCGTCCTCGGATTCT-3’ | 5’-GAAGGTGATCCAGACTCTGACCTT-3’ |
| Sap-1 | 5’-GCTTTTGCCACCACACCACCCATTTCG-3’ | 5’-GCCCAGACAGAGTGAATGGCCCATGAC-3’ |
| Elk-1 | 5’-ACCTGAAATCGGAAGAGCTTAAT-3’ | 5’-AACTTCCAACTCTTCCTTGGG-3’ |
| TNF-α | 5’-ATGGGCTACAGGCTTGTCACT-3’ | 5’-CTCTTGGCAGCCTTCCTGATT-3’ |
| IFN-β | 5’-GTCTCCTCCAAATTGCTCTC-3’ | 5’-ACAGGAGCTTCTGACACTGA-3’ |
| IFN-α | 5’-TGGCTGTGAAGAAATACTTCCG-3’ | 5’-TGTTTTCATGTTGGACCAGATG-3’ |
| IL-6 | 5’-ATGTAGCCGCCCCACACAGA-3’ | 5’-CATCCATCTTTTTCAGCCAT-3’ |
| IL-1β | 5’-ACAGATGAAGTGCTCCTTCCA-3’ | 5’-GTCGGAGATTCGTAGCTGGAT-3’ |
| GAPDH | 5'-AAGGCTGTGGGCAAGG-3' | 5'-TGGAGGAGTGGGTGTCG-3' |
List of Antibodies used
| ANTIBODY | CAT. NO. | COMPANY |
|---|---|---|
| Anti-GAPDH | ab9485 | ABCAM |
| Anti-H3 | ab10799 | ABCAM |
| Anti-H3K36Me3 | ab9050 | ABCAM |
| Anti-H3K4Me3 | 39159 | ACTIVE MOTIF |
| Anti-H3K9Me3 | 39161 | ACTIVE MOTIF |
| Anti-H3K27Me3 | 39155 | ACTIVE MOTIF |
| Anti-H3K18Ac | 39587 | ACTIVE MOTIF |
| Anti-H3K9Ac | MILLIPORE,07-352 | |
| Anti-NFКBp65 | 14-6731-81 | e-BIOSCIENCE |
| Anti-p53 | SC-126 | SANTA CRUZ BIOTECHNOLOGY |
| Anti-Mouse IgG-HRP | W402B | PROMEGA |
| Anti-Rabbit IgG-HRP | A1949 | SIGMA |
| Anti-Rabbit Alexa Fluor | A11034 | INVITROGEN |
Fig. 1TLR7 expression remains compromised in HepG2.2.15 cell lines. The expressions are significantly re-established on viral elimination. TLR7 expression of HBV infected subjects is downregulated compared to disease control steatosis patients and is also inversely related to the HBV DNA load in liver biopsy samples. a TLR7 mRNA expression of HepG2.2.15 cells is regained on treatment with Lamivudine, a potent nucleoside analog reverse transcriptase inhibitor, at different doses (20, 50 and 100μM). a TLR7 mRNA expression of HepG2 cells taken as control after treatment with Lamivudine shows no change. b TLR7 expression in HepG2.2.15 cells on treatment with different doses of Lamivudine. b HBV DNA viral load is suppressed on treatment of Lamivudine in a dose dependent manner. c The mean TLR7 expression of the control subjects was arbitrarily set as 1. The fold change of TLR7 expression in each of the patients was then evaluated. Increased TLR7 expression of liver biopsy specimen of control subjects with steatosis (LB_1-6) compared to HBV infected patients (LB7_18) along with clinical and virological parameters of the patients. Box and Whisker Plot was used to score the TLR7 expression. d Viral and clinical parameters of the patients
Fig. 2TLR7 pathway is activated on stimulation with its specific ligand imiquimod, R837. Chief downstream regulators, especially NF-ĸB is activated and transclocated to the nucleus on TLR7 activation. a Host immune response on TLR7 activation, using TLR7 ligand. HepG2.2.15 cells were treated with TLR7 agonist, R837 (8μg/ml) for 3 days. mRNA expression of different downstream regulators (NF- КB, JNK, p38 and PI3K) involved in the TLR7 pathway. b Confocal imaging showing nuclear uptake of Nuclear Factor-КB p65 subunit (NF- КB) from cytoplasm in cells where HepG2.2.15 cells are taken as control and HepG2.2.15 cells stimulated with TLR7 ligand, R837 (8μg/ml) for 72 h. c Nuclear Factor-КB p65 subunit (NF-КB) protein expression of HepG2 and HepG2.2.15 cells. d Nuclear Factor-КB p65 subunit (NF- КB) protein expression of HepG2.2.15 cells taken as control and treated with R837 (8μg/ml) for 72 h
Fig. 3HBV titre was evaluated in culture supernatants of HepG2.2.15 cells after treatment with 4, 6 and 8μg/ml of TLR7 agonist (R837) for 72 h. a HBV DNA was isolated from the culture media of R837 treated cells and the load was assessed by absolute real-time PCR using WHO standards. b HBsAg and HBeAg were detected from the culture supernatant of treated cells by ELISA
Fig. 4TLR7 mediated cellular signaling pathway in suppression of HBV replication. HepG2.2.15 cells were pretreated with or without different pathway inhibitors (NF-КB pathway inhibitor PDTC, MAPK/JNK pathway inhibitor SP600125, PI3K-AKT inhibitor LY294002 and MAPK/p38 pathway inhibitor SB203580). After 1 h incubation, R837 was treated for 6 h. a Schematic representation of TLR7 signaling pathway and important inhibitors of relevant signaling molecules. b and c. HBV DNA, HBsAg AND HBeAg from culture supernatants on stimulation with R837 alone or pre-treated with different pathway inhibitors detected by real time RT- PCR and ELISA. d. Relative mRNA expression of JNK–dependent/ independent responsive genes (c-Jun, c-Myc, Elk-1 and SAP-1)
Fig. 5Status of epigenetic markers and transcription factors on TLR7 activation. HepG2.2.15 cells were treated with R837 for 72 h and then the cells were subjected to Western Blot for protein expression studies. a Protein expression of different histone modifications (H3K4Me3, H3K9Me3, H3K36Me3 and H3K9Ac) and p53 before and after TLR7 activation. b The relative expression of the proteins (H3K9Me3 and p53) in HepG2 and HepG2.2.15 cells
Fig. 6Flow cytometric analysis and alteration of key cell cycle regulators upon TLR7 activation. HepG2.2.15 cells were treated with R837 (8μg/ml) for 72 h and then subjected to flow cytometric analysis to study the status of G1/S arrest. a Cell cycle analysis by FACS. b Percentage of cells in different phases of cell cycle before and after TLR7 activation. c p53 expression in liver biopsy samples of chronic HBV patients compared to control steatosis patients. d Relative mRNA expression of different cell cycle regulators (p53, Cyclin E, Cyclin D1, Cyclin B1 and Cyclin A) on R837 treatment. e Detection of invitro cell proliferation on TLR7 activation using MTT assay. HepG2.2.15 cells were treated with R837 for 72 h and then incubated with MTT at the indicated time points