Literature DB >> 28088073

Strategies to design clinical studies to identify predictive biomarkers in cancer research.

Jose Luis Perez-Gracia1, Miguel F Sanmamed2, Ana Bosch3, Ana Patiño-Garcia4, Kurt A Schalper5, Victor Segura6, Joaquim Bellmunt7, Josep Tabernero8, Christopher J Sweeney7, Toni K Choueiri7, Miguel Martín9, Juan Pablo Fusco10, Maria Esperanza Rodriguez-Ruiz11, Alfonso Calvo12, Celia Prior13, Luis Paz-Ares14, Ruben Pio15, Enrique Gonzalez-Billalabeitia16, Alvaro Gonzalez Hernandez17, David Páez18, Jose María Piulats19, Alfonso Gurpide20, Mapi Andueza10, Guillermo de Velasco7, Roberto Pazo21, Enrique Grande22, Pilar Nicolas23, Francisco Abad-Santos24, Jesus Garcia-Donas25, Daniel Castellano14, María J Pajares26, Cristina Suarez8, Ramon Colomer27, Luis M Montuenga26, Ignacio Melero11.   

Abstract

The discovery of reliable biomarkers to predict efficacy and toxicity of anticancer drugs remains one of the key challenges in cancer research. Despite its relevance, no efficient study designs to identify promising candidate biomarkers have been established. This has led to the proliferation of a myriad of exploratory studies using dissimilar strategies, most of which fail to identify any promising targets and are seldom validated. The lack of a proper methodology also determines that many anti-cancer drugs are developed below their potential, due to failure to identify predictive biomarkers. While some drugs will be systematically administered to many patients who will not benefit from them, leading to unnecessary toxicities and costs, others will never reach registration due to our inability to identify the specific patient population in which they are active. Despite these drawbacks, a limited number of outstanding predictive biomarkers have been successfully identified and validated, and have changed the standard practice of oncology. In this manuscript, a multidisciplinary panel reviews how those key biomarkers were identified and, based on those experiences, proposes a methodological framework-the DESIGN guidelines-to standardize the clinical design of biomarker identification studies and to develop future research in this pivotal field.
Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Biomarkers; Clinical trial design; Extreme phenotypes; Mutation; Rearrangement

Mesh:

Substances:

Year:  2016        PMID: 28088073     DOI: 10.1016/j.ctrv.2016.12.005

Source DB:  PubMed          Journal:  Cancer Treat Rev        ISSN: 0305-7372            Impact factor:   12.111


  26 in total

Review 1.  Machine learning approaches to drug response prediction: challenges and recent progress.

Authors:  George Adam; Ladislav Rampášek; Zhaleh Safikhani; Petr Smirnov; Benjamin Haibe-Kains; Anna Goldenberg
Journal:  NPJ Precis Oncol       Date:  2020-06-15

2.  Neoadjuvant immunotherapy in non-small cell lung cancer: the sooner the better?

Authors:  Jose Luis Perez-Gracia; Miguel F Sanmamed; Ignacio Melero
Journal:  Transl Lung Cancer Res       Date:  2018-12

3.  Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma.

Authors:  Bracha Shraibman; Eilon Barnea; Dganit Melamed Kadosh; Yael Haimovich; Gleb Slobodin; Itzhak Rosner; Carlos López-Larrea; Norbert Hilf; Sabrina Kuttruff; Colette Song; Cedrik Britten; John Castle; Sebastian Kreiter; Katrin Frenzel; Marcos Tatagiba; Ghazaleh Tabatabai; Pierre-Yves Dietrich; Valérie Dutoit; Wolfgang Wick; Michael Platten; Frank Winkler; Andreas von Deimling; Judith Kroep; Juan Sahuquillo; Francisco Martinez-Ricarte; Jordi Rodon; Ulrik Lassen; Christian Ottensmeier; Sjoerd H van der Burg; Per Thor Straten; Hans Skovgaard Poulsen; Berta Ponsati; Hideho Okada; Hans-Georg Rammensee; Ugur Sahin; Harpreet Singh; Arie Admon
Journal:  Mol Cell Proteomics       Date:  2019-06       Impact factor: 5.911

4.  226th ENMC International Workshop:: Towards validated and qualified biomarkers for therapy development for Duchenne muscular dystrophy 20-22 January 2017, Heemskerk, The Netherlands.

Authors:  Annemieke Aartsma-Rus; Alessandra Ferlini; Elizabeth M McNally; Pietro Spitali; H Lee Sweeney
Journal:  Neuromuscul Disord       Date:  2017-10-26       Impact factor: 4.296

Review 5.  Exploiting Circulating MicroRNAs as Biomarkers in Psychiatric Disorders.

Authors:  Bhaskar Roy; Yuta Yoshino; Lauren Allen; Kevin Prall; Grant Schell; Yogesh Dwivedi
Journal:  Mol Diagn Ther       Date:  2020-06       Impact factor: 4.074

6.  Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma.

Authors:  Bracha Shraibman; Eilon Barnea; Dganit Melamed Kadosh; Yael Haimovich; Gleb Slobodin; Itzhak Rosner; Carlos López-Larrea; Norbert Hilf; Sabrina Kuttruff; Colette Song; Cedrik Britten; John Castle; Sebastian Kreiter; Katrin Frenzel; Marcos Tatagiba; Ghazaleh Tabatabai; Pierre-Yves Dietrich; Valérie Dutoit; Wolfgang Wick; Michael Platten; Frank Winkler; Andreas von Deimling; Judith Kroep; Juan Sahuquillo; Francisco Martinez-Ricarte; Jordi Rodon; Ulrik Lassen; Christian Ottensmeier; Sjoerd H van der Burg; Per Thor Straten; Hans Skovgaard Poulsen; Berta Ponsati; Hideho Okada; Hans-Georg Rammensee; Ugur Sahin; Harpreet Singh; Arie Admon
Journal:  Mol Cell Proteomics       Date:  2018-08-02       Impact factor: 5.911

7.  Preanalytical Variables for the Genomic Assessment of the Cellular and Acellular Fractions of the Liquid Biopsy in a Cohort of Breast Cancer Patients.

Authors:  Stephanie N Shishido; Lisa Welter; Mariam Rodriguez-Lee; Anand Kolatkar; Liya Xu; Carmen Ruiz; Anna S Gerdtsson; Sara Restrepo-Vassalli; Anders Carlsson; Joe Larsen; Emily J Greenspan; E Shelley Hwang; Kathryn R Waitman; Jorge Nieva; Kelly Bethel; James Hicks; Peter Kuhn
Journal:  J Mol Diagn       Date:  2020-01-22       Impact factor: 5.568

8.  Changes in serum interleukin-8 (IL-8) levels reflect and predict response to anti-PD-1 treatment in melanoma and non-small-cell lung cancer patients.

Authors:  M F Sanmamed; J L Perez-Gracia; K A Schalper; J P Fusco; A Gonzalez; M E Rodriguez-Ruiz; C Oñate; G Perez; C Alfaro; S Martín-Algarra; M P Andueza; A Gurpide; M Morgado; J Wang; A Bacchiocchi; R Halaban; H Kluger; L Chen; M Sznol; I Melero
Journal:  Ann Oncol       Date:  2017-08-01       Impact factor: 32.976

9.  Targeted drug delivery strategies for precision medicines.

Authors:  Mandana T Manzari; Yosi Shamay; Hiroto Kiguchi; Neal Rosen; Maurizio Scaltriti; Daniel A Heller
Journal:  Nat Rev Mater       Date:  2021-02-02       Impact factor: 66.308

10.  Circulating and Tumor-Infiltrating NK Cells From Clear Cell Renal Cell Carcinoma Patients Exhibit a Predominantly Inhibitory Phenotype Characterized by Overexpression of CD85j, CD45, CD48 and PD-1.

Authors:  Andrea Ziblat; Ximena Lucía Raffo Iraolagoitia; Sol Yanel Nuñez; Nicolás Ignacio Torres; Florencia Secchiari; Jessica Mariel Sierra; Raúl Germán Spallanzani; Agustín Rovegno; Fernando Pablo Secin; Mercedes Beatriz Fuertes; Carolina Inés Domaica; Norberto Walter Zwirner
Journal:  Front Immunol       Date:  2021-06-04       Impact factor: 7.561

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