Literature DB >> 28085346

Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach.

Xubiao Peng1, Adam K Sieradzan2, Antti J Niemi3,4,5.   

Abstract

The Landau-Ginzburg-Wilson paradigm is applied to model the low-temperature crystallographic Cα backbone structure of sperm whale myoglobin. The Glauber protocol is employed to simulate its response to an increase in ambient temperature. The myoglobin is found to unfold from its native state by a succession of α-helical intermediates, fully in line with the observed folding and unfolding patterns in denaturation experiments. In particular, a molten globule intermediate is identified with experimentally correct attributes. A detailed, experimentally testable contact map is constructed to characterize the specifics of the unfolding pathway, including the formation of long-range interactions. The results reveal how the unfolding process of a protein is driven by the interplay between, and a successive melting of, its modular secondary structure components.

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Year:  2016        PMID: 28085346     DOI: 10.1103/PhysRevE.94.062405

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  6 in total

1.  New Insights into Folding, Misfolding, and Nonfolding Dynamics of a WW Domain.

Authors:  Khatuna Kachlishvili; Anatolii Korneev; Luka Maisuradze; Jiaojiao Liu; Harold A Scheraga; Alexander Molochkov; Patrick Senet; Antti J Niemi; Gia G Maisuradze
Journal:  J Phys Chem B       Date:  2020-05-01       Impact factor: 2.991

2.  Exploring Structural Flexibility and Stability of α-Synuclein by the Landau-Ginzburg-Wilson Approach.

Authors:  Anatolii Korneev; Alexander Begun; Sergei Liubimov; Khatuna Kachlishvili; Alexander Molochkov; Antti J Niemi; Gia G Maisuradze
Journal:  J Phys Chem B       Date:  2022-09-02       Impact factor: 3.466

3.  Investigation of Phosphorylation-Induced Folding of an Intrinsically Disordered Protein by Coarse-Grained Molecular Dynamics.

Authors:  Adam K Sieradzan; Anatolii Korneev; Alexander Begun; Khatuna Kachlishvili; Harold A Scheraga; Alexander Molochkov; Patrick Senet; Antti J Niemi; Gia G Maisuradze
Journal:  J Chem Theory Comput       Date:  2021-04-28       Impact factor: 6.006

4.  A structural model of the immune checkpoint CD160-HVEM complex derived from HDX-mass spectrometry and molecular modeling.

Authors:  Katarzyna Kuncewicz; Marta Spodzieja; Adam Sieradzan; Agnieszka Karczyńska; Katarzyna Dąbrowska; Michał Dadlez; Daniel E Speiser; Laurent Derre; Sylwia Rodziewicz-Motowidło
Journal:  Oncotarget       Date:  2019-01-11

5.  Protein tertiary structure and the myoglobin phase diagram.

Authors:  Alexander Begun; Alexander Molochkov; Antti J Niemi
Journal:  Sci Rep       Date:  2019-07-25       Impact factor: 4.379

6.  On topology and knotty entanglement in protein folding.

Authors:  Alexander Begun; Sergei Liubimov; Alexander Molochkov; Antti J Niemi
Journal:  PLoS One       Date:  2021-01-13       Impact factor: 3.240

  6 in total

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