Literature DB >> 28083135

Crystal structure of catena-poly[[bis-(N-acethyl-thio-morpholine-κS)copper(I)]-μ-iodido].

Hojae Chiang1, Tae Ho Kim1, Hyunjin Park1, Jineun Kim1.   

Abstract

The reaction of copper(I) iodide with N-acetyl-thio-morpholine (L, C6H11NOS) in aceto-nitrile results in a coordination polymer with composition [CuI(L)2] n . The CuI atom is coordinated by two S atoms and two I atoms, adopting a distorted tetra-hedral environment. The μ2-bridging mode of the I atoms gives rise to chains extending parallel to [010]. C-H⋯O hydrogen-bonding inter-actions between the chains lead to a three-dimensional network.

Entities:  

Keywords:  N-acetyl­thio­morpholine; coordination polymer; copper(I) iodide; crystal structure

Year:  2017        PMID: 28083135      PMCID: PMC5209771          DOI: 10.1107/S2056989016019794

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Synthesis, structures and luminescence properties of copper(I) complexes involving CuI and thio­ethers as co-ligands have been studied extensively (Harvey & Knorr, 2010 ▸; Knorr et al., 2010 ▸; Henline et al., 2014 ▸). The tendency of copper(I) iodide to form aggregates often leads to short CuCu bonds and intriguing diversities in the respective crystal structures (Peng et al., 2010 ▸), comprising of [CuI] chains with split stair motifs (Moreno et al., 1995 ▸; Blake et al., 1999 ▸; Cariati et al., 2002 ▸; Näther et al., 2003 ▸; Thébault et al., 2006 ▸), zigzag chains (Munakata et al., 1997 ▸) or helical chains (Munakata et al., 1997 ▸; Kang & Anson, 1995 ▸). Most of these structures include aromatic nitro­gen donor co-ligands. In this context we have studied the inter­action of N-acetyl­thio­morpholine with CuI to investigate the coordination behaviour of the copper(I) atom with the S donor atom of the N-acetyl­thio­morpholine co-ligand, because both are soft atoms in the sense of the HSAB concept. Although a number of copper(I) complexes with thio­ether ligands are known (Knorr et al., 2010 ▸; Henline et al., 2014 ▸), to the best of our knowledge, a [CuI] chain structure has not been reported until now. Herein, we report a copper(I) coordination polymer with a zigzag chain [CuI], resulting from the reaction of CuI with N-acetyl­thio­morpholine (L).

Structural commentary

The asymmetric unit of the title compound, [CuI(L)2], comprises of a copper(I) iodide moiety and two N-acetyl­thio­morpholine co-ligands (L A and L B) and is shown in Fig. 1 ▸. The CuI atom has a slightly distorted tetra­hedral environment (Table 1 ▸). The two thio­morpholine rings have the stable chair conformation (Kang et al., 2015 ▸). The dihedral angles between acetyl CCO and thio­morpholine CNC planes are 3.9 (4) and 6.6 (2)° for L A and L B, respectively. The I atoms link neighboring CuI atoms in a μ 2 -bridging mode into polymeric zigzag chains extending parallel to [010] (Fig. 2 ▸).
Figure 1

The asymmetric unit of the title compound, shown with displacement ellipsoids drawn at the 50% probability level. H atom are shown as small spheres of arbitrary radius.

Table 1

Selected geometric parameters (Å, °)

Cu1—S12.3012 (6)Cu1—I12.6221 (3)
Cu1—S22.3064 (6)Cu1—I1i 2.6476 (3)
    
S1—Cu1—S2114.28 (2)S2—Cu1—I1101.246 (16)
S1—Cu1—I1112.179 (17)I1—Cu1—I1i 109.949 (9)

Symmetry code: (i) .

Figure 2

The polymeric chain structure in [CuI(L)2] formed through the μ2-bridging mode of the I atoms. All H atoms have been omitted for clarity.

Supra­molecular features

As shown in Fig. 3 ▸, C10—H10A⋯ O1 hydrogen bonds (yellow dashed lines) between the thio­morpholine ring of L B and the carbonyl oxygen atoms of L A result in a layered network parallel to (101). Additional C12—H12B⋯O2 hydrogen bonds between methyl groups of L B ligands and carbonyl oxygen atoms of neighbouring L B ligands (red dashed lines) form cyclic centrosymmetric dimers of N-acetyl­thio­morpholines. The combination of the [CuI] chains and the two types of hydrogen-bonding inter­actions with additional C—H⋯O inter­actions (Table 2 ▸) leads to a three-dimensional network.
Figure 3

The crystal structure of [CuI(L)2] in a projection along [010]. C—H⋯O hydrogen bonds are shown as yellow and red dashed lines. H atoms not involved in inter­molecular inter­actions have been omitted for clarity.

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4A⋯O2ii 0.992.523.241 (3)129
C6—H6B⋯O2ii 0.982.473.418 (3)162
C10—H10A⋯O1iii 0.992.583.144 (3)116
C12—H12B⋯O2iv 0.982.593.372 (3)137

Symmetry codes: (ii) ; (iii) ; (iv) .

Synthesis and crystallization

Preparation of N-acetyl­thio­morpholine (L) Thio­morpholine (1.03 g, 0.010 mol) and tri­ethyl­amine (1.03 g, 0.010 mol) in chloro­form (20 mL) were placed in a one-neck round-bottomed flask and kept at 273 K. Then, acetic anhydride (1.02 g, 0.010 mol) was added dropwise. The reactant mixture was stirred for approximately one day. The orange liquid product was purified by using short column chromatography (silica gel, 90% n-hexane and 10% ethyl acetate, R = 0.28; yield 1.08 g, 74.5%). 1H NMR (300 MHz, CDCl3) / ppm: 3.860 (triplet, 2H, CH2-N), 3.719 (triplet, 2H, CH2-N), 2.614 (triplet, 2H, CH2-S), 2.597 (triplet, 2H, CH2-S), 2.086 (singlet, 3H, CH3); 13C NMR (300MHz, CDCl3) / ppm: 168.919 (C=O); 48.993, 43.972 (N—C); 27.248, 27.740 (S—C), 21.527(CH3) Preparation of [CuI(L)2] An aceto­nitrile (2 mL) solution of L (0.08 g, 0.55 mmol) was allowed to mix with an aceto­nitrile (3 mL) solution of CuI (0.052 g, 0.27 mmol). The colorless precipitate was filtered and washed with diethyl ether/aceto­nitrile (3/1 v/v) solution (yield 0.116 g, 88.5%). Single crystals suitable for X-ray analysis were obtained by slow evaporation.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. All C-bound H atoms were positioned geometrically, with d(C—H) = 0.99 Å, U iso = 1.2U eq(C) for methyl­ene, and d(C—H) = 0.98 Å, U iso = 1.5U eq(C) for methyl groups.
Table 3

Experimental details

Crystal data
Chemical formula[CuI(C6H11NOS)2]
M r 480.87
Crystal system, space groupMonoclinic, P21/n
Temperature (K)173
a, b, c (Å)14.1513 (4), 7.6557 (2), 16.9423 (4)
β (°)113.805 (1)
V3)1679.34 (8)
Z 4
Radiation typeMo Kα
μ (mm−1)3.39
Crystal size (mm)0.40 × 0.10 × 0.02
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2014)
T min, T max 0.518, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections12664, 3306, 3020
R int 0.023
(sin θ/λ)max−1)0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.018, 0.045, 1.05
No. of reflections3306
No. of parameters183
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.51, −0.37

Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2010 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989016019794/wm5347sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016019794/wm5347Isup2.hkl CCDC reference: 1522053 Additional supporting information: crystallographic information; 3D view; checkCIF report
[CuI(C6H11NOS)2]F(000) = 952
Mr = 480.87Dx = 1.902 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 14.1513 (4) ÅCell parameters from 8258 reflections
b = 7.6557 (2) Åθ = 2.4–27.4°
c = 16.9423 (4) ŵ = 3.39 mm1
β = 113.805 (1)°T = 173 K
V = 1679.34 (8) Å3Plate, colourless
Z = 40.40 × 0.10 × 0.02 mm
Bruker APEXII CCD diffractometer3020 reflections with I > 2σ(I)
φ and ω scansRint = 0.023
Absorption correction: multi-scan (SADABS; Bruker, 2014)θmax = 26.0°, θmin = 1.6°
Tmin = 0.518, Tmax = 0.746h = −13→17
12664 measured reflectionsk = −9→9
3306 independent reflectionsl = −20→20
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.018H-atom parameters constrained
wR(F2) = 0.045w = 1/[σ2(Fo2) + (0.0221P)2 + 0.5521P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.003
3306 reflectionsΔρmax = 0.51 e Å3
183 parametersΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cu10.18899 (2)1.02851 (3)0.16379 (2)0.02035 (7)
I10.22857 (2)1.36381 (2)0.18629 (2)0.02246 (6)
S10.01447 (4)0.97167 (7)0.10384 (3)0.01843 (11)
S20.27317 (4)0.95551 (7)0.07682 (3)0.01754 (11)
O1−0.12671 (13)0.4134 (2)0.18413 (10)0.0306 (4)
O20.55531 (13)0.4901 (2)0.13221 (10)0.0326 (4)
N1−0.12119 (14)0.6992 (2)0.15212 (11)0.0222 (4)
N20.41457 (14)0.6547 (2)0.05909 (11)0.0211 (4)
C1−0.09223 (18)0.6587 (3)0.08061 (14)0.0261 (5)
H1A−0.14570.70490.02640.031*
H1B−0.08970.53030.07470.031*
C20.01160 (17)0.7356 (3)0.09339 (15)0.0237 (5)
H2A0.02790.70340.04370.028*
H2B0.06560.68450.14590.028*
C3−0.03090 (17)0.9830 (3)0.18944 (13)0.0204 (5)
H3A0.02200.93230.24270.024*
H3B−0.04081.10680.20110.024*
C4−0.13193 (17)0.8852 (3)0.16610 (14)0.0226 (5)
H4A−0.15590.89940.21310.027*
H4B−0.18490.93650.11300.027*
C5−0.13845 (16)0.5668 (3)0.19871 (13)0.0227 (5)
C6−0.1756 (2)0.6151 (3)0.26767 (15)0.0301 (5)
H6A−0.24610.66100.24060.045*
H6B−0.13000.70450.30540.045*
H6C−0.17480.51140.30180.045*
C70.46423 (17)0.8128 (3)0.10528 (14)0.0241 (5)
H7A0.47100.89830.06400.029*
H7B0.53450.78410.14800.029*
C80.40226 (17)0.8939 (3)0.15130 (14)0.0244 (5)
H8A0.43890.99870.18330.029*
H8B0.39730.80930.19370.029*
C90.23472 (16)0.7451 (3)0.02483 (13)0.0195 (4)
H9A0.22950.65960.06680.023*
H9B0.16580.7552−0.02330.023*
C100.31244 (17)0.6798 (3)−0.00969 (14)0.0229 (5)
H10A0.28790.5677−0.04030.027*
H10B0.31720.7653−0.05180.027*
C110.46543 (18)0.4999 (3)0.07934 (14)0.0234 (5)
C120.4073 (2)0.3374 (3)0.03610 (18)0.0339 (6)
H12A0.45290.23580.05600.051*
H12B0.38370.3489−0.02660.051*
H12C0.34750.32210.05080.051*
U11U22U33U12U13U23
Cu10.02182 (15)0.01848 (14)0.02120 (14)−0.00092 (11)0.00916 (12)−0.00102 (10)
I10.03471 (10)0.01382 (8)0.01707 (8)−0.00131 (6)0.00859 (7)−0.00134 (5)
S10.0196 (3)0.0185 (3)0.0176 (2)0.0000 (2)0.0080 (2)0.00071 (19)
S20.0196 (3)0.0148 (2)0.0179 (2)−0.0001 (2)0.0073 (2)−0.00149 (19)
O10.0306 (9)0.0224 (9)0.0302 (9)−0.0033 (7)0.0034 (7)0.0003 (7)
O20.0305 (10)0.0403 (10)0.0256 (9)0.0143 (8)0.0099 (8)0.0080 (7)
N10.0240 (10)0.0211 (10)0.0236 (9)−0.0025 (8)0.0119 (8)−0.0020 (7)
N20.0179 (9)0.0209 (10)0.0220 (9)0.0008 (7)0.0055 (8)−0.0049 (7)
C10.0296 (13)0.0257 (12)0.0245 (12)−0.0081 (10)0.0123 (10)−0.0085 (9)
C20.0280 (12)0.0194 (11)0.0266 (11)0.0000 (10)0.0141 (10)−0.0055 (9)
C30.0245 (12)0.0203 (11)0.0184 (10)0.0004 (9)0.0108 (9)−0.0017 (8)
C40.0224 (12)0.0221 (12)0.0257 (11)0.0038 (9)0.0122 (10)0.0023 (9)
C50.0128 (11)0.0265 (12)0.0199 (11)−0.0047 (9)−0.0025 (9)0.0005 (9)
C60.0292 (13)0.0332 (14)0.0290 (12)−0.0054 (11)0.0129 (11)0.0064 (10)
C70.0185 (11)0.0270 (12)0.0246 (11)−0.0017 (10)0.0065 (9)−0.0059 (9)
C80.0189 (12)0.0299 (12)0.0203 (11)0.0004 (10)0.0036 (9)−0.0079 (9)
C90.0179 (11)0.0171 (10)0.0197 (10)−0.0012 (9)0.0036 (9)−0.0021 (8)
C100.0206 (11)0.0246 (11)0.0197 (11)0.0009 (9)0.0042 (9)−0.0065 (9)
C110.0311 (13)0.0254 (12)0.0234 (11)0.0058 (10)0.0211 (11)0.0055 (9)
C120.0403 (15)0.0210 (12)0.0523 (16)0.0006 (11)0.0308 (13)0.0014 (11)
Cu1—S12.3012 (6)C3—H3A0.9900
Cu1—S22.3064 (6)C3—H3B0.9900
Cu1—I12.6221 (3)C4—H4A0.9900
Cu1—I1i2.6476 (3)C4—H4B0.9900
I1—Cu1ii2.6476 (3)C5—C61.508 (3)
S1—C31.810 (2)C6—H6A0.9800
S1—C21.815 (2)C6—H6B0.9800
S2—C91.811 (2)C6—H6C0.9800
S2—C81.814 (2)C7—C81.521 (3)
O1—C51.225 (3)C7—H7A0.9900
O2—C111.227 (3)C7—H7B0.9900
N1—C51.366 (3)C8—H8A0.9900
N1—C11.460 (3)C8—H8B0.9900
N1—C41.462 (3)C9—C101.523 (3)
N2—C111.357 (3)C9—H9A0.9900
N2—C101.457 (3)C9—H9B0.9900
N2—C71.459 (3)C10—H10A0.9900
C1—C21.515 (3)C10—H10B0.9900
C1—H1A0.9900C11—C121.508 (3)
C1—H1B0.9900C12—H12A0.9800
C2—H2A0.9900C12—H12B0.9800
C2—H2B0.9900C12—H12C0.9800
C3—C41.518 (3)
S1—Cu1—S2114.28 (2)O1—C5—N1121.6 (2)
S1—Cu1—I1112.179 (17)O1—C5—C6120.6 (2)
S2—Cu1—I1101.246 (16)N1—C5—C6117.7 (2)
S1—Cu1—I1i108.190 (16)C5—C6—H6A109.5
S2—Cu1—I1i110.870 (16)C5—C6—H6B109.5
I1—Cu1—I1i109.949 (9)H6A—C6—H6B109.5
Cu1—I1—Cu1ii126.245 (8)C5—C6—H6C109.5
C3—S1—C297.16 (10)H6A—C6—H6C109.5
C3—S1—Cu1107.58 (7)H6B—C6—H6C109.5
C2—S1—Cu1102.08 (7)N2—C7—C8111.16 (18)
C9—S2—C897.32 (10)N2—C7—H7A109.4
C9—S2—Cu1113.27 (7)C8—C7—H7A109.4
C8—S2—Cu1104.68 (7)N2—C7—H7B109.4
C5—N1—C1119.82 (18)C8—C7—H7B109.4
C5—N1—C4125.09 (18)H7A—C7—H7B108.0
C1—N1—C4115.07 (17)C7—C8—S2112.12 (15)
C11—N2—C10124.83 (18)C7—C8—H8A109.2
C11—N2—C7119.84 (18)S2—C8—H8A109.2
C10—N2—C7115.28 (17)C7—C8—H8B109.2
N1—C1—C2112.30 (18)S2—C8—H8B109.2
N1—C1—H1A109.1H8A—C8—H8B107.9
C2—C1—H1A109.1C10—C9—S2110.89 (15)
N1—C1—H1B109.1C10—C9—H9A109.5
C2—C1—H1B109.1S2—C9—H9A109.5
H1A—C1—H1B107.9C10—C9—H9B109.5
C1—C2—S1112.54 (16)S2—C9—H9B109.5
C1—C2—H2A109.1H9A—C9—H9B108.0
S1—C2—H2A109.1N2—C10—C9111.90 (17)
C1—C2—H2B109.1N2—C10—H10A109.2
S1—C2—H2B109.1C9—C10—H10A109.2
H2A—C2—H2B107.8N2—C10—H10B109.2
C4—C3—S1111.67 (14)C9—C10—H10B109.2
C4—C3—H3A109.3H10A—C10—H10B107.9
S1—C3—H3A109.3O2—C11—N2121.7 (2)
C4—C3—H3B109.3O2—C11—C12120.4 (2)
S1—C3—H3B109.3N2—C11—C12117.9 (2)
H3A—C3—H3B107.9C11—C12—H12A109.5
N1—C4—C3111.95 (18)C11—C12—H12B109.5
N1—C4—H4A109.2H12A—C12—H12B109.5
C3—C4—H4A109.2C11—C12—H12C109.5
N1—C4—H4B109.2H12A—C12—H12C109.5
C3—C4—H4B109.2H12B—C12—H12C109.5
H4A—C4—H4B107.9
C5—N1—C1—C2−120.4 (2)C11—N2—C7—C8−120.0 (2)
C4—N1—C1—C261.1 (3)C10—N2—C7—C862.5 (2)
N1—C1—C2—S1−59.4 (2)N2—C7—C8—S2−60.5 (2)
C3—S1—C2—C152.97 (17)C9—S2—C8—C754.16 (18)
Cu1—S1—C2—C1162.73 (14)Cu1—S2—C8—C7170.60 (15)
C2—S1—C3—C4−53.85 (17)C8—S2—C9—C10−54.05 (16)
Cu1—S1—C3—C4−158.97 (13)Cu1—S2—C9—C10−163.52 (12)
C5—N1—C4—C3119.1 (2)C11—N2—C10—C9118.9 (2)
C1—N1—C4—C3−62.5 (2)C7—N2—C10—C9−63.8 (2)
S1—C3—C4—N161.7 (2)S2—C9—C10—N261.7 (2)
C1—N1—C5—O12.6 (3)C10—N2—C11—O2172.7 (2)
C4—N1—C5—O1−179.1 (2)C7—N2—C11—O2−4.6 (3)
C1—N1—C5—C6−175.7 (2)C10—N2—C11—C12−8.6 (3)
C4—N1—C5—C62.6 (3)C7—N2—C11—C12174.10 (19)
D—H···AD—HH···AD···AD—H···A
C4—H4A···O2ii0.992.523.241 (3)129
C6—H6B···O2ii0.982.473.418 (3)162
C10—H10A···O1iii0.992.583.144 (3)116
C12—H12B···O2iv0.982.593.372 (3)137
  6 in total

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Authors:  Michael Knorr; Abdoulaye Pam; Abderrahim Khatyr; Carsten Strohmann; Marek M Kubicki; Yoann Rousselin; Shawkat M Aly; Daniel Fortin; Pierre D Harvey
Journal:  Inorg Chem       Date:  2010-07-05       Impact factor: 5.165

2.  Control of copper(I) iodide architectures by ligand design: angular versus linear bridging ligands.

Authors:  Frédéric Thébault; Sarah A Barnett; Alexander J Blake; Claire Wilson; Neil R Champness; Martin Schröder
Journal:  Inorg Chem       Date:  2006-08-07       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Dimorphism of a new CuI coordination polymer:synthesis, crystal structures and properties of catena[CuI(2-iodopyrazine-N)] and poly[CuI(mu2-2-iodopyrazine-N,N')].

Authors:  Christian Näther; Mario Wriedt; Inke Jess
Journal:  Inorg Chem       Date:  2003-04-07       Impact factor: 5.165

5.  Luminescent coordination polymers built upon cu(4) x(4) (x=br,i) clusters and mono- and dithioethers.

Authors:  Pierre D Harvey; Michael Knorr
Journal:  Macromol Rapid Commun       Date:  2010-05-11       Impact factor: 5.734

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  6 in total

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