| Literature DB >> 28083129 |
Jessica L Gray1, Deidra L Gerlach1, Elizabeth T Papish1.
Abstract
The crystal structure of the title salt, [Cu(ClO4)(C8H20N4)]ClO4, is reported. The CuII ion exhibits a square-pyramidal geometry and is coordinated by the four N atoms of the neutral 1,4,7,10-tetra-aza-cyclo-dodecane (cyclen) ligand and an O atom from one perchlorate anion, with the second perchlorate ion hydrogen-bonded to one of the amine N atoms of the cyclen ligand. Additional N-H⋯O hydrogen bonds between the amine H atoms and the coordinating and non-coordinating perchlorate groups create a three-dimensional network structure. Crystals were grown from a concentrated methanol solution at ambient temperature, resulting in no co-crystallization of solvent.Entities:
Keywords: copper(II); crystal structure; cyclen; perchlorate
Year: 2017 PMID: 28083129 PMCID: PMC5209765 DOI: 10.1107/S2056989016019563
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Side (left) and top (right) views, as defined by the cyclen ligand ring, of [Cu(cyclen)](ClO4)2 represented with ellipsoids at the 50% probability level. Hydrogen bonds are drawn in blue.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O6i | 0.86 (1) | 2.50 (2) | 3.171 (1) | 135 (1) |
| N1—H1⋯O2 | 0.86 (1) | 2.39 (1) | 3.093 (1) | 139 (1) |
| N2—H2⋯O8ii | 0.88 (2) | 2.31 (2) | 3.050 (1) | 142 (1) |
| N2—H2⋯O3 | 0.88 (2) | 2.44 (2) | 3.052 (2) | 127 (1) |
| N3—H3⋯O1ii | 0.86 (2) | 2.40 (1) | 3.245 (1) | 169 (2) |
| N3—H3⋯O4ii | 0.86 (2) | 2.55 (2) | 3.132 (1) | 126 (1) |
| N4—H4⋯O5 | 0.86 (2) | 2.36 (1) | 3.096 (1) | 143 (1) |
Symmetry codes: (i) ; (ii) .
Figure 2View of the unit cell along the a axis. An inversion center (yellow dots) exists between two asymmetric units, creating the dimeric unit defined at the center of the unit cell. Hydrogen bonds are drawn in blue.
Figure 3A view of hydrogen bonding within a dimer pair. Hydrogen bonds are drawn in blue. Carbon and hydrogen atom labels have been omitted for clarity.
Figure 4Packing of the complex cations, as viewed along the c axis of the unit cell. The a axis is drawn in red and the b axis is drawn in green.
Figure 5Hydrogen bonding between complex cations and anions, as viewed along the c axis. Hydrogen bonds are drawn in blue. The a axis is drawn in red and the b axis is drawn in green.
Experimental details
| Crystal data | |
| Chemical formula | [Cu(ClO4)(C8H20N4)]ClO4 |
|
| 434.72 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 173 |
|
| 8.9387 (2), 15.0607 (4), 11.9235 (3) |
| β (°) | 92.949 (1) |
|
| 1603.05 (7) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.74 |
| Crystal size (mm) | 0.23 × 0.21 × 0.18 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.667, 0.747 |
| No. of measured, independent and observed [ | 43306, 7519, 6655 |
|
| 0.021 |
| (sin θ/λ)max (Å−1) | 0.830 |
| Refinement | |
|
| 0.025, 0.068, 1.02 |
| No. of reflections | 7519 |
| No. of parameters | 221 |
| No. of restraints | 6 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.60, −0.44 |
Computer programs: APEX2 and SAINT-Plus (Bruker, 2013 ▸), SHELXT (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and SHELXLE (Hübschle et al., 2011 ▸).
| [Cu(ClO4)(C8H20N4)]ClO4 | |
| Monoclinic, | Mo |
| Cell parameters from 9899 reflections | |
| θ = 2.3–35.9° | |
| µ = 1.74 mm−1 | |
| β = 92.949 (1)° | |
| Block, purple | |
| 0.23 × 0.21 × 0.18 mm |
| Bruker SMART APEXII CCD diffractometer | 6655 reflections with |
| Radiation source: fine focus sealed tube | |
| phi and ω scans | θmax = 36.2°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2014) | |
| 43306 measured reflections | |
| 7519 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.003 | |
| 7519 reflections | Δρmax = 0.60 e Å−3 |
| 221 parameters | Δρmin = −0.44 e Å−3 |
| 6 restraints | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0025 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.42855 (13) | 0.41595 (9) | 0.83806 (10) | 0.0315 (2) | |
| H1A | 0.5240 | 0.4277 | 0.8813 | 0.038* | |
| H1B | 0.4043 | 0.3521 | 0.8450 | 0.038* | |
| C2 | 0.30439 (15) | 0.47211 (10) | 0.88238 (9) | 0.0341 (2) | |
| H2A | 0.2850 | 0.4540 | 0.9601 | 0.041* | |
| H2B | 0.3344 | 0.5354 | 0.8835 | 0.041* | |
| C3 | 0.07219 (14) | 0.38402 (9) | 0.83922 (11) | 0.0330 (2) | |
| H3A | 0.0198 | 0.3977 | 0.9083 | 0.040* | |
| H3B | 0.1353 | 0.3308 | 0.8533 | 0.040* | |
| C4 | −0.04050 (12) | 0.36717 (8) | 0.74254 (13) | 0.0353 (3) | |
| H4A | −0.0945 | 0.3110 | 0.7554 | 0.042* | |
| H4B | −0.1148 | 0.4160 | 0.7378 | 0.042* | |
| C5 | 0.08786 (13) | 0.27094 (7) | 0.60632 (10) | 0.0297 (2) | |
| H5A | 0.0006 | 0.2334 | 0.5836 | 0.036* | |
| H5B | 0.1415 | 0.2431 | 0.6720 | 0.036* | |
| C6 | 0.19107 (16) | 0.27947 (8) | 0.51035 (10) | 0.0345 (2) | |
| H6A | 0.2356 | 0.2209 | 0.4943 | 0.041* | |
| H6B | 0.1335 | 0.2998 | 0.4420 | 0.041* | |
| C7 | 0.44486 (13) | 0.30541 (7) | 0.60226 (11) | 0.0302 (2) | |
| H7A | 0.5046 | 0.2707 | 0.5500 | 0.036* | |
| H7B | 0.4126 | 0.2651 | 0.6620 | 0.036* | |
| C8 | 0.53867 (12) | 0.38048 (8) | 0.65356 (12) | 0.0315 (2) | |
| H8A | 0.6201 | 0.3558 | 0.7037 | 0.038* | |
| H8B | 0.5847 | 0.4147 | 0.5934 | 0.038* | |
| H1 | 0.4734 (19) | 0.4937 (9) | 0.7172 (14) | 0.038* | |
| H2 | 0.1146 (18) | 0.5097 (10) | 0.8063 (14) | 0.038* | |
| H3 | −0.0155 (19) | 0.3802 (12) | 0.5781 (13) | 0.038* | |
| H4 | 0.3389 (19) | 0.3719 (11) | 0.4820 (12) | 0.038* | |
| N1 | 0.44205 (10) | 0.43993 (6) | 0.71871 (8) | 0.02310 (15) | |
| N2 | 0.16614 (10) | 0.46012 (7) | 0.80849 (8) | 0.02595 (16) | |
| N3 | 0.03746 (11) | 0.36146 (6) | 0.63546 (9) | 0.02866 (19) | |
| N4 | 0.31208 (12) | 0.34444 (6) | 0.54087 (8) | 0.02774 (18) | |
| O1 | 0.19181 (10) | 0.55583 (5) | 0.55695 (6) | 0.02513 (14) | |
| O2 | 0.40695 (9) | 0.63197 (6) | 0.62923 (8) | 0.03461 (19) | |
| O3 | 0.17927 (13) | 0.64843 (8) | 0.71488 (9) | 0.0461 (3) | |
| O4 | 0.21084 (11) | 0.71021 (6) | 0.53609 (9) | 0.0388 (2) | |
| O5 | 0.24547 (13) | 0.44353 (6) | 0.31635 (7) | 0.0375 (2) | |
| O6 | 0.36978 (11) | 0.40926 (8) | 0.15317 (8) | 0.0381 (2) | |
| O7 | 0.21333 (13) | 0.30342 (6) | 0.23229 (9) | 0.0411 (2) | |
| O8 | 0.10864 (11) | 0.42926 (7) | 0.14227 (8) | 0.0380 (2) | |
| Cl1 | 0.24776 (3) | 0.63777 (2) | 0.61025 (2) | 0.02082 (4) | |
| Cl2 | 0.23354 (3) | 0.39588 (2) | 0.21099 (2) | 0.02216 (5) | |
| Cu1 | 0.23119 (2) | 0.42802 (2) | 0.65438 (2) | 0.01773 (3) |
| C1 | 0.0265 (5) | 0.0390 (6) | 0.0278 (5) | −0.0022 (4) | −0.0100 (4) | 0.0095 (4) |
| C2 | 0.0368 (6) | 0.0465 (7) | 0.0184 (4) | −0.0037 (5) | −0.0038 (4) | −0.0015 (4) |
| C3 | 0.0296 (5) | 0.0328 (5) | 0.0375 (6) | 0.0004 (4) | 0.0110 (4) | 0.0077 (4) |
| C4 | 0.0176 (4) | 0.0285 (5) | 0.0600 (8) | −0.0005 (4) | 0.0049 (5) | 0.0049 (5) |
| C5 | 0.0299 (5) | 0.0191 (4) | 0.0386 (5) | −0.0049 (3) | −0.0117 (4) | 0.0052 (4) |
| C6 | 0.0523 (7) | 0.0237 (5) | 0.0266 (5) | −0.0087 (5) | −0.0064 (5) | −0.0022 (4) |
| C7 | 0.0307 (5) | 0.0206 (4) | 0.0402 (6) | 0.0008 (4) | 0.0099 (4) | 0.0013 (4) |
| C8 | 0.0199 (4) | 0.0252 (5) | 0.0501 (7) | −0.0006 (3) | 0.0081 (4) | 0.0014 (4) |
| N1 | 0.0190 (3) | 0.0217 (3) | 0.0282 (4) | −0.0023 (3) | −0.0021 (3) | 0.0033 (3) |
| N2 | 0.0241 (4) | 0.0280 (4) | 0.0259 (4) | 0.0011 (3) | 0.0030 (3) | 0.0013 (3) |
| N3 | 0.0236 (4) | 0.0208 (4) | 0.0400 (5) | −0.0022 (3) | −0.0134 (3) | 0.0065 (3) |
| N4 | 0.0403 (5) | 0.0208 (4) | 0.0224 (4) | −0.0040 (3) | 0.0032 (3) | 0.0018 (3) |
| O1 | 0.0361 (4) | 0.0155 (3) | 0.0227 (3) | −0.0025 (3) | −0.0091 (3) | −0.0012 (2) |
| O2 | 0.0213 (4) | 0.0348 (4) | 0.0466 (5) | −0.0019 (3) | −0.0095 (3) | 0.0080 (4) |
| O3 | 0.0542 (6) | 0.0452 (6) | 0.0408 (5) | −0.0136 (5) | 0.0192 (4) | −0.0216 (4) |
| O4 | 0.0420 (5) | 0.0181 (3) | 0.0538 (5) | −0.0016 (3) | −0.0219 (4) | 0.0084 (3) |
| O5 | 0.0614 (6) | 0.0281 (4) | 0.0222 (3) | 0.0054 (4) | −0.0054 (4) | −0.0058 (3) |
| O6 | 0.0258 (4) | 0.0516 (6) | 0.0371 (4) | −0.0021 (4) | 0.0033 (3) | 0.0019 (4) |
| O7 | 0.0536 (6) | 0.0203 (4) | 0.0493 (5) | −0.0032 (4) | 0.0031 (5) | −0.0015 (4) |
| O8 | 0.0302 (4) | 0.0538 (6) | 0.0295 (4) | 0.0164 (4) | −0.0042 (3) | −0.0005 (4) |
| Cl1 | 0.02111 (9) | 0.01695 (8) | 0.02384 (9) | −0.00122 (7) | −0.00426 (7) | −0.00201 (7) |
| Cl2 | 0.02481 (10) | 0.02058 (9) | 0.02081 (9) | 0.00237 (7) | −0.00149 (7) | −0.00166 (7) |
| Cu1 | 0.01806 (5) | 0.01641 (5) | 0.01824 (5) | −0.00136 (3) | −0.00382 (4) | 0.00267 (3) |
| C1—N1 | 1.4791 (14) | C7—H7A | 0.9900 |
| C1—C2 | 1.5122 (19) | C7—H7B | 0.9900 |
| C1—H1A | 0.9900 | C8—N1 | 1.4901 (15) |
| C1—H1B | 0.9900 | C8—H8A | 0.9900 |
| C2—N2 | 1.4913 (15) | C8—H8B | 0.9900 |
| C2—H2A | 0.9900 | N1—Cu1 | 2.0061 (9) |
| C2—H2B | 0.9900 | N1—H1 | 0.858 (14) |
| C3—N2 | 1.4781 (16) | N2—Cu1 | 2.0145 (9) |
| C3—C4 | 1.513 (2) | N2—H2 | 0.876 (14) |
| C3—H3A | 0.9900 | N3—Cu1 | 2.0036 (9) |
| C3—H3B | 0.9900 | N3—H3 | 0.859 (13) |
| C4—N3 | 1.4881 (18) | N4—Cu1 | 2.0099 (10) |
| C4—H4A | 0.9900 | N4—H4 | 0.859 (13) |
| C4—H4B | 0.9900 | O1—Cl1 | 1.4644 (7) |
| C5—N3 | 1.4826 (15) | O1—Cu1 | 2.2664 (7) |
| C5—C6 | 1.5118 (19) | O2—Cl1 | 1.4320 (8) |
| C5—H5A | 0.9900 | O3—Cl1 | 1.4267 (10) |
| C5—H5B | 0.9900 | O4—Cl1 | 1.4321 (9) |
| C6—N4 | 1.4898 (15) | O5—Cl2 | 1.4459 (9) |
| C6—H6A | 0.9900 | O6—Cl2 | 1.4441 (10) |
| C6—H6B | 0.9900 | O7—Cl2 | 1.4285 (9) |
| C7—N4 | 1.4835 (16) | O8—Cl2 | 1.4409 (9) |
| C7—C8 | 1.5174 (17) | ||
| N1—C1—C2 | 107.30 (9) | C1—N1—C8 | 115.66 (9) |
| N1—C1—H1A | 110.3 | C1—N1—Cu1 | 102.97 (7) |
| C2—C1—H1A | 110.3 | C8—N1—Cu1 | 107.77 (7) |
| N1—C1—H1B | 110.3 | C1—N1—H1 | 107.1 (11) |
| C2—C1—H1B | 110.3 | C8—N1—H1 | 110.9 (12) |
| H1A—C1—H1B | 108.5 | Cu1—N1—H1 | 112.2 (11) |
| N2—C2—C1 | 109.06 (9) | C3—N2—C2 | 114.31 (10) |
| N2—C2—H2A | 109.9 | C3—N2—Cu1 | 103.55 (7) |
| C1—C2—H2A | 109.9 | C2—N2—Cu1 | 107.38 (7) |
| N2—C2—H2B | 109.9 | C3—N2—H2 | 111.3 (12) |
| C1—C2—H2B | 109.9 | C2—N2—H2 | 109.4 (12) |
| H2A—C2—H2B | 108.3 | Cu1—N2—H2 | 110.7 (11) |
| N2—C3—C4 | 107.81 (10) | C5—N3—C4 | 114.55 (9) |
| N2—C3—H3A | 110.1 | C5—N3—Cu1 | 102.42 (7) |
| C4—C3—H3A | 110.1 | C4—N3—Cu1 | 108.34 (7) |
| N2—C3—H3B | 110.1 | C5—N3—H3 | 106.1 (12) |
| C4—C3—H3B | 110.1 | C4—N3—H3 | 113.6 (12) |
| H3A—C3—H3B | 108.5 | Cu1—N3—H3 | 111.3 (12) |
| N3—C4—C3 | 109.92 (9) | C7—N4—C6 | 114.37 (9) |
| N3—C4—H4A | 109.7 | C7—N4—Cu1 | 102.84 (7) |
| C3—C4—H4A | 109.7 | C6—N4—Cu1 | 107.10 (8) |
| N3—C4—H4B | 109.7 | C7—N4—H4 | 110.1 (12) |
| C3—C4—H4B | 109.7 | C6—N4—H4 | 110.2 (12) |
| H4A—C4—H4B | 108.2 | Cu1—N4—H4 | 112.0 (12) |
| N3—C5—C6 | 107.69 (9) | Cl1—O1—Cu1 | 116.92 (4) |
| N3—C5—H5A | 110.2 | O3—Cl1—O2 | 109.65 (7) |
| C6—C5—H5A | 110.2 | O3—Cl1—O4 | 111.02 (7) |
| N3—C5—H5B | 110.2 | O2—Cl1—O4 | 109.85 (6) |
| C6—C5—H5B | 110.2 | O3—Cl1—O1 | 108.78 (6) |
| H5A—C5—H5B | 108.5 | O2—Cl1—O1 | 109.36 (5) |
| N4—C6—C5 | 109.55 (9) | O4—Cl1—O1 | 108.14 (5) |
| N4—C6—H6A | 109.8 | O7—Cl2—O8 | 109.87 (7) |
| C5—C6—H6A | 109.8 | O7—Cl2—O6 | 109.78 (7) |
| N4—C6—H6B | 109.8 | O8—Cl2—O6 | 109.12 (6) |
| C5—C6—H6B | 109.8 | O7—Cl2—O5 | 109.49 (6) |
| H6A—C6—H6B | 108.2 | O8—Cl2—O5 | 109.95 (6) |
| N4—C7—C8 | 108.37 (9) | O6—Cl2—O5 | 108.61 (6) |
| N4—C7—H7A | 110.0 | N3—Cu1—N1 | 151.33 (4) |
| C8—C7—H7A | 110.0 | N3—Cu1—N4 | 87.11 (4) |
| N4—C7—H7B | 110.0 | N1—Cu1—N4 | 87.14 (4) |
| C8—C7—H7B | 110.0 | N3—Cu1—N2 | 86.24 (4) |
| H7A—C7—H7B | 108.4 | N1—Cu1—N2 | 86.52 (4) |
| N1—C8—C7 | 109.56 (9) | N4—Cu1—N2 | 153.54 (4) |
| N1—C8—H8A | 109.8 | N3—Cu1—O1 | 104.87 (3) |
| C7—C8—H8A | 109.8 | N1—Cu1—O1 | 103.78 (3) |
| N1—C8—H8B | 109.8 | N4—Cu1—O1 | 103.79 (3) |
| C7—C8—H8B | 109.8 | N2—Cu1—O1 | 102.66 (3) |
| H8A—C8—H8B | 108.2 | ||
| N1—C1—C2—N2 | 54.05 (13) | C6—C5—N3—C4 | −168.48 (9) |
| N2—C3—C4—N3 | 50.52 (13) | C6—C5—N3—Cu1 | −51.42 (9) |
| N3—C5—C6—N4 | 53.24 (12) | C3—C4—N3—C5 | 89.53 (11) |
| N4—C7—C8—N1 | 51.48 (13) | C3—C4—N3—Cu1 | −24.09 (11) |
| C2—C1—N1—C8 | −169.09 (9) | C8—C7—N4—C6 | −165.51 (10) |
| C2—C1—N1—Cu1 | −51.82 (10) | C8—C7—N4—Cu1 | −49.77 (10) |
| C7—C8—N1—C1 | 89.34 (12) | C5—C6—N4—C7 | 87.24 (12) |
| C7—C8—N1—Cu1 | −25.21 (11) | C5—C6—N4—Cu1 | −26.00 (11) |
| C4—C3—N2—C2 | −166.49 (10) | Cu1—O1—Cl1—O3 | −58.89 (8) |
| C4—C3—N2—Cu1 | −50.00 (10) | Cu1—O1—Cl1—O2 | 60.85 (7) |
| C1—C2—N2—C3 | 87.01 (12) | Cu1—O1—Cl1—O4 | −179.55 (6) |
| C1—C2—N2—Cu1 | −27.24 (11) |
| H··· | ||||
| N1—H1···O6i | 0.86 (1) | 2.50 (2) | 3.171 (1) | 135 (1) |
| N1—H1···O2 | 0.86 (1) | 2.39 (1) | 3.093 (1) | 139 (1) |
| N2—H2···O8ii | 0.88 (2) | 2.31 (2) | 3.050 (1) | 142 (1) |
| N2—H2···O3 | 0.88 (2) | 2.44 (2) | 3.052 (2) | 127 (1) |
| N3—H3···O1ii | 0.86 (2) | 2.40 (1) | 3.245 (1) | 169 (2) |
| N3—H3···O4ii | 0.86 (2) | 2.55 (2) | 3.132 (1) | 126 (1) |
| N4—H4···O5 | 0.86 (2) | 2.36 (1) | 3.096 (1) | 143 (1) |