| Literature DB >> 28083125 |
Dong Won Lee1, Jong Won Shin1.
Abstract
The title ZnII complex, [Zn(NCS)2(C20H21N3)], has been characterized by synchrotron single-crystal diffraction and FT-IR spectroscopy. The central ZnII ion has a distorted square-pyramidal coordination geometry, with three N atoms of the chiral (S) 1-phenyl-N,N-bis-[(pyridin-2-yl)meth-yl]ethanamine (S-ppme) ligand and one N atom of a thio-cyanate anion in the equatorial plane, and one N atom of another thio-cyanate anion at the apical position. The average Zn-N S-ppme and Zn-NNCS bond lengths are 2.183 (2) and 1.986 (2) Å, respectively. In the crystal, inter-molecular C-H⋯S hydrogen bonds and a face-to-face π-π inter-action [centroid-centroid distance = 3.482 (1) Å] link the mol-ecules and give rise to a supra-molecular sheet structure parallel to the ac plane.Entities:
Keywords: chiral ligand; crystal structure; sodium thiocyanate; synchrotron data; π–π interactions
Year: 2017 PMID: 28083125 PMCID: PMC5209761 DOI: 10.1107/S2056989016019253
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title compound, showing the atom-labelling scheme, with displacement ellipsoids drawn at the 50% probability.
Figure 2A view of the crystal-packing structure for the title compound, showing the C—H⋯S hydrogen bonds (sky-blue dashed lines) and π–π interactions (black dashed lines).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯S2i | 0.95 | 2.77 | 3.604 (5) | 147 |
| C11—H11⋯S1ii | 0.95 | 2.80 | 3.738 (5) | 169 |
Symmetry codes: (i) ; (ii) .
Experimental details
| Crystal data | |
| Chemical formula | [Zn(NCS)2(C20H21N3)] |
|
| 484.93 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 19.270 (4), 7.7950 (16), 14.834 (3) |
| β (°) | 91.71 (3) |
|
| 2227.2 (8) |
|
| 4 |
| Radiation type | Synchrotron, λ = 0.630 Å |
| μ (mm−1) | 0.94 |
| Crystal size (mm) | 0.10 × 0.04 × 0.02 |
| Data collection | |
| Diffractometer | ADSC Q210 CCD area detector |
| Absorption correction | Empirical (using intensity measurements) ( |
|
| 0.912, 0.981 |
| No. of measured, independent and observed [ | 11189, 6035, 5123 |
|
| 0.048 |
| (sin θ/λ)max (Å−1) | 0.696 |
| Refinement | |
|
| 0.039, 0.093, 0.99 |
| No. of reflections | 6035 |
| No. of parameters | 272 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.35, −1.03 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.010 (6) |
Computer programs: PAL BL2D-SMDC (Shin et al., 2016 ▸), HKL3000sm (Otwinowski & Minor, 1997 ▸), SHELXS2014 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Putz & Brandenburg, 2014 ▸) and publCIF (Westrip, 2010 ▸).
| [Zn(NCS)2(C20H21N3)] | |
| Monoclinic, | Synchrotron radiation, λ = 0.630 Å |
| Cell parameters from 32924 reflections | |
| θ = 0.4–33.6° | |
| µ = 0.94 mm−1 | |
| β = 91.71 (3)° | |
| Needle, colorless | |
| 0.10 × 0.04 × 0.02 mm |
| ADSC Q210 CCD area detector diffractometer | 5123 reflections with |
| Radiation source: PLSII 2D bending magnet | |
| ω scan | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: empirical (using intensity measurements) ( | |
| 11189 measured reflections | |
| 6035 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.35 e Å−3 | |
| 6035 reflections | Δρmin = −1.03 e Å−3 |
| 272 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: −0.010 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Zn1 | 0.46128 (2) | 0.33954 (6) | 0.76988 (3) | 0.01920 (11) | |
| N1 | 0.52691 (16) | 0.5093 (4) | 0.8331 (2) | 0.0213 (7) | |
| N2 | 0.40589 (15) | 0.6204 (4) | 0.7503 (2) | 0.0165 (7) | |
| N3 | 0.43224 (14) | 0.3562 (5) | 0.6353 (2) | 0.0199 (6) | |
| C1 | 0.5905 (2) | 0.4552 (6) | 0.8617 (3) | 0.0287 (9) | |
| H1 | 0.6043 | 0.3414 | 0.8480 | 0.034* | |
| C2 | 0.6357 (2) | 0.5585 (7) | 0.9097 (3) | 0.0331 (10) | |
| H2 | 0.6797 | 0.5161 | 0.9298 | 0.040* | |
| C3 | 0.6165 (2) | 0.7254 (7) | 0.9286 (3) | 0.0306 (10) | |
| H3 | 0.6474 | 0.7999 | 0.9606 | 0.037* | |
| C4 | 0.5509 (2) | 0.7824 (6) | 0.8998 (3) | 0.0254 (9) | |
| H4 | 0.5362 | 0.8960 | 0.9126 | 0.030* | |
| C5 | 0.50773 (19) | 0.6714 (6) | 0.8525 (3) | 0.0198 (8) | |
| C6 | 0.4348 (2) | 0.7272 (5) | 0.8232 (3) | 0.0232 (8) | |
| H6A | 0.4042 | 0.7208 | 0.8755 | 0.028* | |
| H6B | 0.4360 | 0.8480 | 0.8028 | 0.028* | |
| C7 | 0.44001 (19) | 0.6585 (6) | 0.6647 (3) | 0.0194 (7) | |
| H7A | 0.4905 | 0.6735 | 0.6761 | 0.023* | |
| H7B | 0.4212 | 0.7666 | 0.6388 | 0.023* | |
| C8 | 0.42740 (19) | 0.5140 (5) | 0.5994 (3) | 0.0188 (8) | |
| C9 | 0.4133 (2) | 0.5404 (7) | 0.5076 (3) | 0.0277 (10) | |
| H9 | 0.4107 | 0.6529 | 0.4831 | 0.033* | |
| C10 | 0.4032 (2) | 0.3974 (7) | 0.4533 (3) | 0.0360 (13) | |
| H10 | 0.3938 | 0.4108 | 0.3905 | 0.043* | |
| C11 | 0.4069 (2) | 0.2344 (7) | 0.4910 (3) | 0.0360 (13) | |
| H11 | 0.3991 | 0.1356 | 0.4546 | 0.043* | |
| C12 | 0.4220 (2) | 0.2182 (6) | 0.5822 (3) | 0.0282 (10) | |
| H12 | 0.4252 | 0.1069 | 0.6081 | 0.034* | |
| C13 | 0.32788 (18) | 0.6288 (5) | 0.7383 (3) | 0.0188 (8) | |
| H13 | 0.3149 | 0.5409 | 0.6917 | 0.023* | |
| C14 | 0.30213 (18) | 0.8003 (5) | 0.7011 (3) | 0.0184 (8) | |
| C15 | 0.2898 (2) | 0.9419 (5) | 0.7561 (3) | 0.0238 (8) | |
| H15 | 0.2977 | 0.9328 | 0.8194 | 0.029* | |
| C16 | 0.2663 (2) | 1.0954 (6) | 0.7194 (3) | 0.0286 (10) | |
| H16 | 0.2576 | 1.1899 | 0.7579 | 0.034* | |
| C17 | 0.2554 (2) | 1.1123 (5) | 0.6272 (3) | 0.0258 (9) | |
| H17 | 0.2394 | 1.2179 | 0.6024 | 0.031* | |
| C18 | 0.2679 (2) | 0.9745 (6) | 0.5717 (3) | 0.0272 (9) | |
| H18 | 0.2616 | 0.9858 | 0.5083 | 0.033* | |
| C19 | 0.28976 (18) | 0.8195 (6) | 0.6087 (3) | 0.0221 (8) | |
| H19 | 0.2964 | 0.7241 | 0.5701 | 0.027* | |
| C20 | 0.2913 (2) | 0.5759 (6) | 0.8239 (3) | 0.0253 (9) | |
| H20A | 0.2982 | 0.6648 | 0.8700 | 0.038* | |
| H20B | 0.3107 | 0.4672 | 0.8462 | 0.038* | |
| H20C | 0.2415 | 0.5619 | 0.8104 | 0.038* | |
| N4 | 0.53102 (18) | 0.1463 (5) | 0.7434 (3) | 0.0299 (8) | |
| C21 | 0.5672 (2) | 0.0390 (5) | 0.7176 (3) | 0.0210 (8) | |
| S1 | 0.61788 (5) | −0.11203 (13) | 0.68120 (7) | 0.0269 (2) | |
| N5 | 0.40467 (18) | 0.2318 (5) | 0.8601 (3) | 0.0267 (8) | |
| S2 | 0.31745 (6) | 0.13587 (16) | 0.99713 (8) | 0.0303 (3) | |
| C22 | 0.3691 (2) | 0.1913 (5) | 0.9177 (3) | 0.0220 (8) |
| Zn1 | 0.01633 (18) | 0.0166 (2) | 0.0249 (2) | 0.0000 (2) | 0.00448 (14) | 0.0002 (2) |
| N1 | 0.0170 (15) | 0.0190 (17) | 0.0276 (17) | 0.0002 (14) | −0.0009 (13) | 0.0016 (13) |
| N2 | 0.0123 (13) | 0.0154 (16) | 0.0221 (16) | −0.0017 (12) | 0.0027 (12) | −0.0035 (12) |
| N3 | 0.0122 (12) | 0.0209 (17) | 0.0270 (15) | 0.0012 (16) | 0.0053 (11) | −0.0060 (15) |
| C1 | 0.0173 (18) | 0.029 (2) | 0.039 (2) | 0.0041 (18) | −0.0019 (17) | 0.0042 (19) |
| C2 | 0.0173 (19) | 0.039 (3) | 0.043 (3) | −0.003 (2) | −0.0062 (18) | 0.004 (2) |
| C3 | 0.027 (2) | 0.040 (3) | 0.025 (2) | −0.012 (2) | −0.0027 (17) | 0.0042 (19) |
| C4 | 0.0291 (19) | 0.026 (2) | 0.0212 (19) | −0.0066 (18) | 0.0015 (15) | 0.0004 (15) |
| C5 | 0.0170 (17) | 0.021 (2) | 0.0212 (18) | −0.0035 (17) | 0.0021 (14) | 0.0012 (15) |
| C6 | 0.0206 (18) | 0.022 (2) | 0.027 (2) | 0.0001 (17) | 0.0027 (15) | −0.0061 (16) |
| C7 | 0.0145 (16) | 0.0213 (19) | 0.0226 (18) | 0.0009 (16) | 0.0041 (14) | 0.0029 (16) |
| C8 | 0.0103 (16) | 0.025 (2) | 0.0217 (19) | 0.0004 (16) | 0.0050 (14) | −0.0006 (16) |
| C9 | 0.0163 (18) | 0.044 (3) | 0.023 (2) | 0.005 (2) | 0.0043 (15) | 0.0002 (19) |
| C10 | 0.0156 (17) | 0.069 (4) | 0.024 (2) | 0.001 (2) | 0.0044 (15) | −0.011 (2) |
| C11 | 0.020 (2) | 0.053 (4) | 0.036 (3) | −0.004 (2) | 0.0055 (19) | −0.026 (2) |
| C12 | 0.018 (2) | 0.027 (2) | 0.040 (3) | 0.0004 (19) | 0.0066 (17) | −0.009 (2) |
| C13 | 0.0138 (16) | 0.0162 (19) | 0.027 (2) | 0.0018 (15) | 0.0036 (14) | −0.0021 (15) |
| C14 | 0.0110 (14) | 0.016 (2) | 0.0280 (19) | 0.0010 (14) | 0.0021 (13) | −0.0027 (14) |
| C15 | 0.0221 (19) | 0.021 (2) | 0.029 (2) | 0.0023 (18) | 0.0022 (15) | −0.0063 (17) |
| C16 | 0.026 (2) | 0.023 (2) | 0.037 (2) | 0.0081 (19) | −0.0006 (18) | −0.0068 (18) |
| C17 | 0.0190 (19) | 0.021 (2) | 0.037 (2) | 0.0048 (17) | −0.0008 (17) | 0.0020 (17) |
| C18 | 0.0201 (19) | 0.031 (2) | 0.030 (2) | 0.0104 (19) | −0.0016 (16) | 0.0013 (18) |
| C19 | 0.0171 (15) | 0.021 (2) | 0.0277 (18) | 0.0029 (18) | −0.0016 (13) | −0.0064 (18) |
| C20 | 0.0179 (17) | 0.027 (2) | 0.031 (2) | 0.0028 (18) | 0.0079 (15) | 0.0043 (18) |
| N4 | 0.0291 (18) | 0.027 (2) | 0.034 (2) | 0.0080 (17) | 0.0060 (16) | 0.0060 (16) |
| C21 | 0.0214 (18) | 0.020 (2) | 0.0216 (18) | 0.0018 (17) | 0.0034 (14) | 0.0026 (15) |
| S1 | 0.0247 (5) | 0.0236 (6) | 0.0326 (5) | 0.0079 (4) | 0.0072 (4) | 0.0012 (4) |
| N5 | 0.0260 (18) | 0.0229 (18) | 0.0316 (19) | −0.0019 (15) | 0.0071 (14) | 0.0042 (15) |
| S2 | 0.0287 (5) | 0.0326 (6) | 0.0300 (6) | −0.0088 (5) | 0.0087 (4) | 0.0029 (5) |
| C22 | 0.0219 (18) | 0.0156 (19) | 0.028 (2) | −0.0021 (17) | −0.0032 (15) | 0.0011 (16) |
| Zn1—N5 | 1.942 (3) | C9—H9 | 0.9500 |
| Zn1—N1 | 2.039 (3) | C10—C11 | 1.389 (8) |
| Zn1—N3 | 2.061 (3) | C10—H10 | 0.9500 |
| Zn1—N4 | 2.064 (4) | C11—C12 | 1.381 (7) |
| Zn1—N2 | 2.449 (3) | C11—H11 | 0.9500 |
| N1—C5 | 1.350 (5) | C12—H12 | 0.9500 |
| N1—C1 | 1.352 (5) | C13—C14 | 1.524 (5) |
| N2—C6 | 1.461 (5) | C13—C20 | 1.526 (5) |
| N2—C7 | 1.478 (5) | C13—H13 | 1.0000 |
| N2—C13 | 1.510 (5) | C14—C19 | 1.392 (5) |
| N3—C8 | 1.342 (6) | C14—C15 | 1.397 (5) |
| N3—C12 | 1.344 (6) | C15—C16 | 1.385 (6) |
| C1—C2 | 1.370 (7) | C15—H15 | 0.9500 |
| C1—H1 | 0.9500 | C16—C17 | 1.384 (6) |
| C2—C3 | 1.383 (7) | C16—H16 | 0.9500 |
| C2—H2 | 0.9500 | C17—C18 | 1.378 (6) |
| C3—C4 | 1.394 (6) | C17—H17 | 0.9500 |
| C3—H3 | 0.9500 | C18—C19 | 1.387 (6) |
| C4—C5 | 1.378 (6) | C18—H18 | 0.9500 |
| C4—H4 | 0.9500 | C19—H19 | 0.9500 |
| C5—C6 | 1.523 (5) | C20—H20A | 0.9800 |
| C6—H6A | 0.9900 | C20—H20B | 0.9800 |
| C6—H6B | 0.9900 | C20—H20C | 0.9800 |
| C7—C8 | 1.500 (6) | N4—C21 | 1.160 (5) |
| C7—H7A | 0.9900 | C21—S1 | 1.633 (4) |
| C7—H7B | 0.9900 | N5—C22 | 1.155 (5) |
| C8—C9 | 1.397 (6) | S2—C22 | 1.624 (4) |
| C9—C10 | 1.385 (7) | ||
| N5—Zn1—N1 | 108.46 (15) | N3—C8—C9 | 122.1 (4) |
| N5—Zn1—N3 | 123.55 (14) | N3—C8—C7 | 115.1 (4) |
| N1—Zn1—N3 | 123.46 (14) | C9—C8—C7 | 122.8 (4) |
| N5—Zn1—N4 | 101.43 (15) | C10—C9—C8 | 117.9 (5) |
| N1—Zn1—N4 | 99.36 (15) | C10—C9—H9 | 121.1 |
| N3—Zn1—N4 | 91.21 (14) | C8—C9—H9 | 121.1 |
| N5—Zn1—N2 | 102.49 (13) | C9—C10—C11 | 119.9 (4) |
| N1—Zn1—N2 | 74.73 (12) | C9—C10—H10 | 120.1 |
| N3—Zn1—N2 | 73.99 (13) | C11—C10—H10 | 120.1 |
| N4—Zn1—N2 | 156.01 (13) | C12—C11—C10 | 119.0 (5) |
| C5—N1—C1 | 118.4 (4) | C12—C11—H11 | 120.5 |
| C5—N1—Zn1 | 122.4 (3) | C10—C11—H11 | 120.5 |
| C1—N1—Zn1 | 119.1 (3) | N3—C12—C11 | 121.6 (5) |
| C6—N2—C7 | 110.6 (3) | N3—C12—H12 | 119.2 |
| C6—N2—C13 | 114.7 (3) | C11—C12—H12 | 119.2 |
| C7—N2—C13 | 110.9 (3) | N2—C13—C14 | 113.1 (3) |
| C6—N2—Zn1 | 105.5 (2) | N2—C13—C20 | 111.9 (3) |
| C7—N2—Zn1 | 94.5 (2) | C14—C13—C20 | 112.6 (3) |
| C13—N2—Zn1 | 118.8 (2) | N2—C13—H13 | 106.2 |
| C8—N3—C12 | 119.6 (4) | C14—C13—H13 | 106.2 |
| C8—N3—Zn1 | 117.1 (3) | C20—C13—H13 | 106.2 |
| C12—N3—Zn1 | 123.2 (3) | C19—C14—C15 | 117.6 (4) |
| N1—C1—C2 | 122.4 (4) | C19—C14—C13 | 119.7 (4) |
| N1—C1—H1 | 118.8 | C15—C14—C13 | 122.7 (4) |
| C2—C1—H1 | 118.8 | C16—C15—C14 | 120.8 (4) |
| C1—C2—C3 | 119.2 (4) | C16—C15—H15 | 119.6 |
| C1—C2—H2 | 120.4 | C14—C15—H15 | 119.6 |
| C3—C2—H2 | 120.4 | C17—C16—C15 | 120.6 (4) |
| C2—C3—C4 | 118.9 (4) | C17—C16—H16 | 119.7 |
| C2—C3—H3 | 120.5 | C15—C16—H16 | 119.7 |
| C4—C3—H3 | 120.5 | C18—C17—C16 | 119.5 (4) |
| C5—C4—C3 | 118.9 (4) | C18—C17—H17 | 120.3 |
| C5—C4—H4 | 120.5 | C16—C17—H17 | 120.3 |
| C3—C4—H4 | 120.5 | C17—C18—C19 | 119.9 (4) |
| N1—C5—C4 | 122.1 (4) | C17—C18—H18 | 120.0 |
| N1—C5—C6 | 117.6 (4) | C19—C18—H18 | 120.0 |
| C4—C5—C6 | 120.3 (4) | C18—C19—C14 | 121.6 (4) |
| N2—C6—C5 | 112.1 (3) | C18—C19—H19 | 119.2 |
| N2—C6—H6A | 109.2 | C14—C19—H19 | 119.2 |
| C5—C6—H6A | 109.2 | C13—C20—H20A | 109.5 |
| N2—C6—H6B | 109.2 | C13—C20—H20B | 109.5 |
| C5—C6—H6B | 109.2 | H20A—C20—H20B | 109.5 |
| H6A—C6—H6B | 107.9 | C13—C20—H20C | 109.5 |
| N2—C7—C8 | 109.6 (3) | H20A—C20—H20C | 109.5 |
| N2—C7—H7A | 109.7 | H20B—C20—H20C | 109.5 |
| C8—C7—H7A | 109.7 | C21—N4—Zn1 | 171.6 (4) |
| N2—C7—H7B | 109.7 | N4—C21—S1 | 179.9 (5) |
| C8—C7—H7B | 109.7 | C22—N5—Zn1 | 170.3 (4) |
| H7A—C7—H7B | 108.2 | N5—C22—S2 | 178.5 (4) |
| C5—N1—C1—C2 | 0.3 (6) | N3—C8—C9—C10 | 0.9 (6) |
| Zn1—N1—C1—C2 | −175.7 (4) | C7—C8—C9—C10 | 179.3 (3) |
| N1—C1—C2—C3 | −1.2 (7) | C8—C9—C10—C11 | 0.4 (6) |
| C1—C2—C3—C4 | 1.4 (7) | C9—C10—C11—C12 | −1.3 (6) |
| C2—C3—C4—C5 | −0.8 (6) | C8—N3—C12—C11 | 0.4 (5) |
| C1—N1—C5—C4 | 0.3 (6) | Zn1—N3—C12—C11 | −175.8 (3) |
| Zn1—N1—C5—C4 | 176.2 (3) | C10—C11—C12—N3 | 0.9 (7) |
| C1—N1—C5—C6 | −177.4 (4) | C6—N2—C13—C14 | 70.2 (4) |
| Zn1—N1—C5—C6 | −1.5 (5) | C7—N2—C13—C14 | −56.0 (4) |
| C3—C4—C5—N1 | 0.0 (6) | Zn1—N2—C13—C14 | −163.8 (2) |
| C3—C4—C5—C6 | 177.7 (4) | C6—N2—C13—C20 | −58.3 (4) |
| C7—N2—C6—C5 | −72.5 (4) | C7—N2—C13—C20 | 175.5 (3) |
| C13—N2—C6—C5 | 161.1 (3) | Zn1—N2—C13—C20 | 67.7 (4) |
| Zn1—N2—C6—C5 | 28.5 (4) | N2—C13—C14—C19 | 94.8 (4) |
| N1—C5—C6—N2 | −21.4 (5) | C20—C13—C14—C19 | −137.1 (4) |
| C4—C5—C6—N2 | 160.8 (3) | N2—C13—C14—C15 | −85.5 (4) |
| C6—N2—C7—C8 | 161.8 (3) | C20—C13—C14—C15 | 42.7 (5) |
| C13—N2—C7—C8 | −69.7 (4) | C19—C14—C15—C16 | −0.1 (6) |
| Zn1—N2—C7—C8 | 53.4 (3) | C13—C14—C15—C16 | −179.9 (4) |
| C12—N3—C8—C9 | −1.3 (5) | C14—C15—C16—C17 | −0.9 (7) |
| Zn1—N3—C8—C9 | 175.1 (3) | C15—C16—C17—C18 | 0.2 (7) |
| C12—N3—C8—C7 | −179.8 (3) | C16—C17—C18—C19 | 1.5 (6) |
| Zn1—N3—C8—C7 | −3.4 (4) | C17—C18—C19—C14 | −2.5 (6) |
| N2—C7—C8—N3 | −41.4 (4) | C15—C14—C19—C18 | 1.8 (6) |
| N2—C7—C8—C9 | 140.1 (4) | C13—C14—C19—C18 | −178.4 (3) |
| H··· | ||||
| C3—H3···S2i | 0.95 | 2.77 | 3.604 (5) | 147 |
| C11—H11···S1ii | 0.95 | 2.80 | 3.738 (5) | 169 |