Literature DB >> 28078335

Dynamics of active Rouse chains.

Dino Osmanović1, Yitzhak Rabin.   

Abstract

We consider how active forces modeled as non-thermal random noise affect the average dynamical properties of a Rouse polymer. As the power spectrum of the noise is not known we keep the analytical treatment as generic as possible and then present results for a few examples of active noise. We discuss the connection between our results and recent experimental studies of dynamics of labeled DNA telomeres in living cells, and propose new chromatin tracking experiments that will allow one to determine the statistical properties of the active forces associated with chromatin remodeling processes.

Entities:  

Year:  2017        PMID: 28078335     DOI: 10.1039/c6sm02722a

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  6 in total

1.  Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes.

Authors:  Marius Socol; Renjie Wang; Daniel Jost; Pascal Carrivain; Cédric Vaillant; Eric Le Cam; Vincent Dahirel; Christophe Normand; Kerstin Bystricky; Jean-Marc Victor; Olivier Gadal; Aurélien Bancaud
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

2.  Structure and dynamics of liposomes designed for drug delivery: coarse-grained molecular dynamics simulations to reveal the role of lipopolymer incorporation.

Authors:  Mohammed Lemaalem; Nourddine Hadrioui; Abdelali Derouiche; Hamid Ridouane
Journal:  RSC Adv       Date:  2020-01-22       Impact factor: 4.036

3.  Chromatin Viscoelasticity Measured by Local Dynamic Analysis.

Authors:  Anat Vivante; Irena Bronshtein; Yuval Garini
Journal:  Biophys J       Date:  2020-04-14       Impact factor: 4.033

4.  Hi-D: nanoscale mapping of nuclear dynamics in single living cells.

Authors:  Haitham A Shaban; Roman Barth; Ludmila Recoules; Kerstin Bystricky
Journal:  Genome Biol       Date:  2020-04-20       Impact factor: 13.583

5.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

Review 6.  The biology and polymer physics underlying large-scale chromosome organization.

Authors:  Shelley Sazer; Helmut Schiessel
Journal:  Traffic       Date:  2017-12-03       Impact factor: 6.215

  6 in total

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