Literature DB >> 28068559

The ageing genome, clonal mosaicism and chronic disease.

Mitchell J Machiela1, Stephen J Chanock2.   

Abstract

Clonal mosaicism arises when a postzygotic mutational event is detectable in subpopulations of cells as an alternative genotype while not present in the germline genome. Although described in a subset of pediatric disorders, new genomic technologies have detected higher than anticipated frequencies of clonal mosaicism in adult population studies, stimulating investigation as to how clonal mosaicism could contribute to chronic human diseases, such as cancer, diabetes and neurodegenerative disorders. It has also been postulated to be an important mechanism for functional cellular diversity, including the brain. Early studies have characterized the spectrum of detectable mosaic alterations and have begun to investigate whether detectable mosaicism could be important as an overall biomarker for risk or in the case of hematologic cancers, identification of preleukemic clones. Published by Elsevier Ltd.

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Year:  2017        PMID: 28068559      PMCID: PMC5446794          DOI: 10.1016/j.gde.2016.12.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  59 in total

1.  Age-related somatic structural changes in the nuclear genome of human blood cells.

Authors:  Lars A Forsberg; Chiara Rasi; Hamid R Razzaghian; Geeta Pakalapati; Lindsay Waite; Krista Stanton Thilbeault; Anna Ronowicz; Nathan E Wineinger; Hemant K Tiwari; Dorret Boomsma; Maxwell P Westerman; Jennifer R Harris; Robert Lyle; Magnus Essand; Fredrik Eriksson; Themistocles L Assimes; Carlos Iribarren; Eric Strachan; Terrance P O'Hanlon; Lisa G Rider; Frederick W Miller; Vilmantas Giedraitis; Lars Lannfelt; Martin Ingelsson; Arkadiusz Piotrowski; Nancy L Pedersen; Devin Absher; Jan P Dumanski
Journal:  Am J Hum Genet       Date:  2012-02-02       Impact factor: 11.025

Review 2.  Linking functional decline of telomeres, mitochondria and stem cells during ageing.

Authors:  Ergün Sahin; Ronald A Depinho
Journal:  Nature       Date:  2010-03-25       Impact factor: 49.962

Review 3.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

4.  Somatic activation of AKT3 causes hemispheric developmental brain malformations.

Authors:  Annapurna Poduri; Gilad D Evrony; Xuyu Cai; Princess Christina Elhosary; Rameen Beroukhim; Maria K Lehtinen; L Benjamin Hills; Erin L Heinzen; Anthony Hill; R Sean Hill; Brenda J Barry; Blaise F D Bourgeois; James J Riviello; A James Barkovich; Peter M Black; Keith L Ligon; Christopher A Walsh
Journal:  Neuron       Date:  2012-04-12       Impact factor: 17.173

Review 5.  Somatic mutation, genomic variation, and neurological disease.

Authors:  Annapurna Poduri; Gilad D Evrony; Xuyu Cai; Christopher A Walsh
Journal:  Science       Date:  2013-07-05       Impact factor: 47.728

6.  Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.

Authors:  Iñigo Martincorena; Amit Roshan; Moritz Gerstung; Peter Ellis; Peter Van Loo; Stuart McLaren; David C Wedge; Anthony Fullam; Ludmil B Alexandrov; Jose M Tubio; Lucy Stebbings; Andrew Menzies; Sara Widaa; Michael R Stratton; Philip H Jones; Peter J Campbell
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

7.  Signatures of post-zygotic structural genetic aberrations in the cells of histologically normal breast tissue that can predispose to sporadic breast cancer.

Authors:  Lars A Forsberg; Chiara Rasi; Gyula Pekar; Hanna Davies; Arkadiusz Piotrowski; Devin Absher; Hamid Reza Razzaghian; Aleksandra Ambicka; Krzysztof Halaszka; Marcin Przewoźnik; Anna Kruczak; Geeta Mandava; Saichand Pasupulati; Julia Hacker; K Reddy Prakash; Ravi Chandra Dasari; Joey Lau; Nelly Penagos-Tafurt; Helena M Olofsson; Gunilla Hallberg; Piotr Skotnicki; Jerzy Mituś; Jaroslaw Skokowski; Michal Jankowski; Ewa Śrutek; Wojciech Zegarski; Eva Tiensuu Janson; Janusz Ryś; Tibor Tot; Jan P Dumanski
Journal:  Genome Res       Date:  2015-10       Impact factor: 9.043

Review 8.  Prioritization of neurodevelopmental disease genes by discovery of new mutations.

Authors:  Alexander Hoischen; Niklas Krumm; Evan E Eichler
Journal:  Nat Neurosci       Date:  2014-05-27       Impact factor: 24.884

9.  Mosaic 13q14 deletions in peripheral leukocytes of non-hematologic cancer cases and healthy controls.

Authors:  Mitchell J Machiela; Weiyin Zhou; Neil Caporaso; Michael Dean; Susan M Gapstur; Lynn Goldin; Victoria L Stevens; Meredith Yeager; Stephen J Chanock
Journal:  J Hum Genet       Date:  2016-01-14       Impact factor: 3.172

10.  Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome.

Authors:  Mitchell J Machiela; Weiyin Zhou; Eric Karlins; Joshua N Sampson; Neal D Freedman; Qi Yang; Belynda Hicks; Casey Dagnall; Christopher Hautman; Kevin B Jacobs; Christian C Abnet; Melinda C Aldrich; Christopher Amos; Laufey T Amundadottir; Alan A Arslan; Laura E Beane-Freeman; Sonja I Berndt; Amanda Black; William J Blot; Cathryn H Bock; Paige M Bracci; Louise A Brinton; H Bas Bueno-de-Mesquita; Laurie Burdett; Julie E Buring; Mary A Butler; Federico Canzian; Tania Carreón; Kari G Chaffee; I-Shou Chang; Nilanjan Chatterjee; Chu Chen; Constance Chen; Kexin Chen; Charles C Chung; Linda S Cook; Marta Crous Bou; Michael Cullen; Faith G Davis; Immaculata De Vivo; Ti Ding; Jennifer Doherty; Eric J Duell; Caroline G Epstein; Jin-Hu Fan; Jonine D Figueroa; Joseph F Fraumeni; Christine M Friedenreich; Charles S Fuchs; Steven Gallinger; Yu-Tang Gao; Susan M Gapstur; Montserrat Garcia-Closas; Mia M Gaudet; J Michael Gaziano; Graham G Giles; Elizabeth M Gillanders; Edward L Giovannucci; Lynn Goldin; Alisa M Goldstein; Christopher A Haiman; Goran Hallmans; Susan E Hankinson; Curtis C Harris; Roger Henriksson; Elizabeth A Holly; Yun-Chul Hong; Robert N Hoover; Chao A Hsiung; Nan Hu; Wei Hu; David J Hunter; Amy Hutchinson; Mazda Jenab; Christoffer Johansen; Kay-Tee Khaw; Hee Nam Kim; Yeul Hong Kim; Young Tae Kim; Alison P Klein; Robert Klein; Woon-Puay Koh; Laurence N Kolonel; Charles Kooperberg; Peter Kraft; Vittorio Krogh; Robert C Kurtz; Andrea LaCroix; Qing Lan; Maria Teresa Landi; Loic Le Marchand; Donghui Li; Xiaolin Liang; Linda M Liao; Dongxin Lin; Jianjun Liu; Jolanta Lissowska; Lingeng Lu; Anthony M Magliocco; Nuria Malats; Keitaro Matsuo; Lorna H McNeill; Robert R McWilliams; Beatrice S Melin; Lisa Mirabello; Lee Moore; Sara H Olson; Irene Orlow; Jae Yong Park; Ana Patiño-Garcia; Beata Peplonska; Ulrike Peters; Gloria M Petersen; Loreall Pooler; Jennifer Prescott; Ludmila Prokunina-Olsson; Mark P Purdue; You-Lin Qiao; Preetha Rajaraman; Francisco X Real; Elio Riboli; Harvey A Risch; Benjamin Rodriguez-Santiago; Avima M Ruder; Sharon A Savage; Fredrick Schumacher; Ann G Schwartz; Kendra L Schwartz; Adeline Seow; Veronica Wendy Setiawan; Gianluca Severi; Hongbing Shen; Xin Sheng; Min-Ho Shin; Xiao-Ou Shu; Debra T Silverman; Margaret R Spitz; Victoria L Stevens; Rachael Stolzenberg-Solomon; Daniel Stram; Ze-Zhong Tang; Philip R Taylor; Lauren R Teras; Geoffrey S Tobias; David Van Den Berg; Kala Visvanathan; Sholom Wacholder; Jiu-Cun Wang; Zhaoming Wang; Nicolas Wentzensen; William Wheeler; Emily White; John K Wiencke; Brian M Wolpin; Maria Pik Wong; Chen Wu; Tangchun Wu; Xifeng Wu; Yi-Long Wu; Jay S Wunder; Lucy Xia; Hannah P Yang; Pan-Chyr Yang; Kai Yu; Krista A Zanetti; Anne Zeleniuch-Jacquotte; Wei Zheng; Baosen Zhou; Regina G Ziegler; Luis A Perez-Jurado; Neil E Caporaso; Nathaniel Rothman; Margaret Tucker; Michael C Dean; Meredith Yeager; Stephen J Chanock
Journal:  Nat Commun       Date:  2016-06-13       Impact factor: 14.919

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  22 in total

1.  Mosaicism by somatic non-functional mutations: one cell lineage at a time.

Authors:  Willy Albert Flegel
Journal:  Haematologica       Date:  2019-03       Impact factor: 9.941

2.  Somatic mosaicism of sex chromosomes in the blood and brain.

Authors:  Emma J Graham; Michael Vermeulen; Badri Vardarajan; David Bennett; Phil De Jager; Richard V Pearse; Tracy L Young-Pearse; Sara Mostafavi
Journal:  Brain Res       Date:  2019-07-23       Impact factor: 3.252

3.  Stem cells: Subclone wars.

Authors:  Stephen Chanock
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

Review 4.  Mosaicism, aging and cancer.

Authors:  Mitchell J Machiela
Journal:  Curr Opin Oncol       Date:  2019-03       Impact factor: 3.645

5.  Characterization of breakpoint regions of large structural autosomal mosaic events.

Authors:  Mitchell J Machiela; Lea Jessop; Weiyin Zhou; Meredith Yeager; Stephen J Chanock
Journal:  Hum Mol Genet       Date:  2017-11-15       Impact factor: 6.150

6.  Development of the variant calling algorithm, ADIScan, and its use to estimate discordant sequences between monozygotic twins.

Authors:  Yangrae Cho; Sunho Lee; Jong Hui Hong; Byong Joon Kim; Woon-Young Hong; Jongcheol Jung; Hyang Burm Lee; Joohon Sung; Han-Na Kim; Hyung-Lae Kim; Jongsun Jung
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

7.  Large-scale analysis of acquired chromosomal alterations in non-tumor samples from patients with cancer.

Authors:  Y A Jakubek; K Chang; S Sivakumar; Y Yu; M R Giordano; J Fowler; C D Huff; H Kadara; E Vilar; P Scheet
Journal:  Nat Biotechnol       Date:  2019-11-04       Impact factor: 54.908

8.  Cell-Size Pleomorphism Drives Aberrant Clone Dispersal in Proliferating Epithelia.

Authors:  Subramanian P Ramanathan; Matej Krajnc; Matthew C Gibson
Journal:  Dev Cell       Date:  2019-09-05       Impact factor: 12.270

9.  Mosaic Y Loss Is Moderately Associated with Solid Tumor Risk.

Authors:  Erikka Loftfield; Weiyin Zhou; Meredith Yeager; Stephen J Chanock; Neal D Freedman; Mitchell J Machiela
Journal:  Cancer Res       Date:  2018-12-03       Impact factor: 12.701

10.  Pre-HCT mosaicism increases relapse risk and lowers survival in acute lymphoblastic leukemia patients post-unrelated HCT.

Authors:  Yiwen Wang; Weiyin Zhou; Junke Wang; Ezgi Karaesmen; Hancong Tang; Philip L McCarthy; Marcelo C Pasquini; Youjin Wang; Lisa J McReynolds; Hormuzd A Katki; Mitchell J Machiela; Meredith Yeager; Loreall Pooler; Xin Sheng; Christopher A Haiman; David Van Den Berg; Stephen R Spellman; Tao Wang; Michelle Kuxhausen; Stephen J Chanock; Stephanie J Lee; Alyssa I Clay-Gilmour; Theresa E Hahn; Shahinaz M Gadalla; Lara E Sucheston-Campbell
Journal:  Blood Adv       Date:  2021-01-12
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