Literature DB >> 28068336

Correction: Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History.

Andrew W Brooks, Kevin D Kohl, Robert M Brucker, Edward J van Opstal, Seth R Bordenstein.   

Abstract

[This corrects the article DOI: 10.1371/journal.pbio.2000225.].

Year:  2017        PMID: 28068336      PMCID: PMC5222595          DOI: 10.1371/journal.pbio.1002587

Source DB:  PubMed          Journal:  PLoS Biol        ISSN: 1544-9173            Impact factor:   8.029


Fig 4 is incorrect. The authors have provided a corrected version which corrects the connecting lines in panels D and E. The figure legend and conclusion remain the same.
Fig 4

Phylosymbiosis between host phylogeny and microbiota dendrogram relationships.

Topological congruencies are quantified by the normalized Robinson–Foulds (RF) metric, which takes into account symmetry in rooted tree shape on a scale from 0 (complete congruence) to 1 (incomplete incongruence). The normalized matching cluster (MC) metric is a refined version of the RF metric that sensitively accounts for incongruences between closely related branches. Horizontal lines connect species whose position is concordant between host phylogeny and microbiota dendrogram based on 99% OTU cutoffs, therefore requiring no topological shift to demonstrate phylosymbiosis. Data available at [26] in folder Fig_4.

Phylosymbiosis between host phylogeny and microbiota dendrogram relationships.

Topological congruencies are quantified by the normalized Robinson–Foulds (RF) metric, which takes into account symmetry in rooted tree shape on a scale from 0 (complete congruence) to 1 (incomplete incongruence). The normalized matching cluster (MC) metric is a refined version of the RF metric that sensitively accounts for incongruences between closely related branches. Horizontal lines connect species whose position is concordant between host phylogeny and microbiota dendrogram based on 99% OTU cutoffs, therefore requiring no topological shift to demonstrate phylosymbiosis. Data available at [26] in folder Fig_4.
  1 in total

1.  Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History.

Authors:  Andrew W Brooks; Kevin D Kohl; Robert M Brucker; Edward J van Opstal; Seth R Bordenstein
Journal:  PLoS Biol       Date:  2016-11-18       Impact factor: 8.029

  1 in total
  7 in total

Review 1.  Under Pressure: Interactions between Commensal Microbiota and the Teleost Immune System.

Authors:  Cecelia Kelly; Irene Salinas
Journal:  Front Immunol       Date:  2017-05-15       Impact factor: 7.561

2.  Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion.

Authors:  Miriam E Shiffman; Rochelle M Soo; Paul G Dennis; Mark Morrison; Gene W Tyson; Philip Hugenholtz
Journal:  PeerJ       Date:  2017-11-16       Impact factor: 2.984

3.  Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones.

Authors:  Luis Martinez-Villegas; Juliana Assis-Geraldo; Leonardo B Koerich; Travis C Collier; Yoosook Lee; Bradley J Main; Nilton B Rodrigues; Alessandra S Orfano; Ana C A M Pires; Thais B Campolina; Rafael Nacif-Pimenta; Djane C Baia-da-Silva; Ana P M Duarte; Ana C Bahia; Claudia M Rios-Velásquez; Marcus V G Lacerda; Wuelton M Monteiro; Gregory C Lanzaro; Nagila F C Secundino; Paulo F P Pimenta
Journal:  PLoS One       Date:  2019-09-03       Impact factor: 3.240

Review 4.  Reflections on the Use of an Invertebrate Chordate Model System for Studies of Gut Microbial Immune Interactions.

Authors:  Assunta Liberti; Ojas Natarajan; Celine Grace F Atkinson; Paolo Sordino; Larry J Dishaw
Journal:  Front Immunol       Date:  2021-02-25       Impact factor: 7.561

Review 5.  Improving Taxonomic Delimitation of Fungal Species in the Age of Genomics and Phenomics.

Authors:  Ashley Stengel; Kimberly M Stanke; Amanda C Quattrone; Joshua R Herr
Journal:  Front Microbiol       Date:  2022-02-17       Impact factor: 5.640

6.  Dietary Utilization Drives the Differentiation of Gut Bacterial Communities between Specialist and Generalist Drosophilid Flies.

Authors:  Jia-Syuan Chen; Shun-Chern Tsaur; Chau-Ti Ting; Shu Fang
Journal:  Microbiol Spectr       Date:  2022-07-11

7.  Shifts in microbial community, pathogenicity-related genes and antibiotic resistance genes during dairy manure piled up.

Authors:  Xu Zhang; Chenjie Ma; Wen Zhang; Wu Li; Jialin Yu; Di Xue; Xiaolin Wu; Guangcun Deng
Journal:  Microb Biotechnol       Date:  2020-03-23       Impact factor: 5.813

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.