Literature DB >> 28064041

Recovering fine details from under-resolved electron tomography data using higher order total variation ℓ1 regularization.

Toby Sanders1, Anne Gelb2, Rodrigo B Platte3, Ilke Arslan4, Kai Landskron5.   

Abstract

Over the last decade or so, reconstruction methods using ℓ1 regularization, often categorized as compressed sensing (CS) algorithms, have significantly improved the capabilities of high fidelity imaging in electron tomography. The most popular ℓ1 regularization approach within electron tomography has been total variation (TV) regularization. In addition to reducing unwanted noise, TV regularization encourages a piecewise constant solution with sparse boundary regions. In this paper we propose an alternative ℓ1 regularization approach for electron tomography based on higher order total variation (HOTV). Like TV, the HOTV approach promotes solutions with sparse boundary regions. In smooth regions however, the solution is not limited to piecewise constant behavior. We demonstrate that this allows for more accurate reconstruction of a broader class of images - even those for which TV was designed for - particularly when dealing with pragmatic tomographic sampling patterns and very fine image features. We develop results for an electron tomography data set as well as a phantom example, and we also make comparisons with discrete tomography approaches.
Copyright © 2017 Elsevier B.V. All rights reserved.

Year:  2017        PMID: 28064041     DOI: 10.1016/j.ultramic.2016.12.020

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  4 in total

1.  Multiscale higher-order TV operators for L1 regularization.

Authors:  Toby Sanders; Rodrigo B Platte
Journal:  Adv Struct Chem Imaging       Date:  2018-10-23

2.  Real-time 3D analysis during electron tomography using tomviz.

Authors:  Jonathan Schwartz; Chris Harris; Jacob Pietryga; Huihuo Zheng; Prashant Kumar; Anastasiia Visheratina; Nicholas A Kotov; Brianna Major; Patrick Avery; Peter Ercius; Utkarsh Ayachit; Berk Geveci; David A Muller; Alessandro Genova; Yi Jiang; Marcus Hanwell; Robert Hovden
Journal:  Nat Commun       Date:  2022-08-01       Impact factor: 17.694

3.  Developing a Reliable Holographic Flow Cyto-Tomography Apparatus by Optimizing the Experimental Layout and Computational Processing.

Authors:  Jaromír Běhal; Francesca Borrelli; Martina Mugnano; Vittorio Bianco; Amedeo Capozzoli; Claudio Curcio; Angelo Liseno; Lisa Miccio; Pasquale Memmolo; Pietro Ferraro
Journal:  Cells       Date:  2022-08-19       Impact factor: 7.666

4.  Compressed sensing for electron cryotomography and high-resolution subtomogram averaging of biological specimens.

Authors:  Jan Böhning; Tanmay A M Bharat; Sean M Collins
Journal:  Structure       Date:  2022-01-19       Impact factor: 5.006

  4 in total

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