Literature DB >> 28063110

Toward the next step in G protein-coupled receptor research: a knowledge-driven analysis for the next potential targets in drug discovery.

Koji Nagata1, Yukie Katayama2, Tomomi Sato3, Yeondae Kwon2, Takeshi Kawabata4.   

Abstract

More than 800 G protein-coupled receptor (GPCR) genes have been discovered in the human genome. Towards the next step in GPCR research, we performed a knowledge-driven analysis of orphan class-A GPCRs that may serve as novel targets in drug discovery. We examined the relationship between 61 orphan class-A GPCR genes and diseases using the Online Mendelian Inheritance in Man (OMIM) database and the DDSS tool. The OMIM database contains data on disease-related variants of the genes. Particularly, the variants of GPR101, GPR161, and GPR88 are related to the genetic diseases: growth hormone-secreting pituitary adenoma 2, pituitary stalk interruption syndrome (not confirmed), and childhood-onset chorea with psychomotor retardation, respectively. On the other hand, the Drug Discovery and Diagnostic Support System (DDSS) tool suggests that 48 out of the 61 orphan receptor genes are related to diseases, judging from their co-occurrences in abstracts of biomedical literature. Notably, GPR50 and GPR3 are related to as many as 25 and 24 disease-associated keywords, respectively. GPR50 is related to 17 keywords of psychiatric disorders, whereas GPR3 is related to 11 keywords of neurological disorders. The aforementioned five orphan GPCRs were characterized genetically, structurally and functionally using the structural life science data cloud VaProS, so as to evaluate their potential as next targets in drug discovery.

Entities:  

Keywords:  DDSS; OMIM; Orphan GPCR; VaProS

Mesh:

Substances:

Year:  2017        PMID: 28063110     DOI: 10.1007/s10969-016-9212-2

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  47 in total

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Journal:  Drug Discov Today       Date:  2002-02-15       Impact factor: 7.851

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Journal:  Genomics       Date:  1994-11-15       Impact factor: 5.736

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Authors:  Kavita Kumari Kakarala; Kaiser Jamil
Journal:  Mol Phylogenet Evol       Date:  2014-02-03       Impact factor: 4.286

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.

Authors:  Alfredo Castello; Bernd Fischer; Katrin Eichelbaum; Rastislav Horos; Benedikt M Beckmann; Claudia Strein; Norman E Davey; David T Humphreys; Thomas Preiss; Lars M Steinmetz; Jeroen Krijgsveld; Matthias W Hentze
Journal:  Cell       Date:  2012-05-31       Impact factor: 41.582

7.  Gigantism and acromegaly due to Xq26 microduplications and GPR101 mutation.

Authors:  Giampaolo Trivellin; Adrian F Daly; Fabio R Faucz; Bo Yuan; Liliya Rostomyan; Darwin O Larco; Marie Helene Schernthaner-Reiter; Eva Szarek; Letícia F Leal; Jean-Hubert Caberg; Emilie Castermans; Chiara Villa; Aggeliki Dimopoulos; Prashant Chittiboina; Paraskevi Xekouki; Nalini Shah; Daniel Metzger; Philippe A Lysy; Emanuele Ferrante; Natalia Strebkova; Nadia Mazerkina; Maria Chiara Zatelli; Maya Lodish; Anelia Horvath; Rodrigo Bertollo de Alexandre; Allison D Manning; Isaac Levy; Margaret F Keil; Maria de la Luz Sierra; Leonor Palmeira; Wouter Coppieters; Michel Georges; Luciana A Naves; Mauricette Jamar; Vincent Bours; T John Wu; Catherine S Choong; Jerome Bertherat; Philippe Chanson; Peter Kamenický; William E Farrell; Anne Barlier; Martha Quezado; Ivana Bjelobaba; Stanko S Stojilkovic; Jurgen Wess; Stefano Costanzi; Pengfei Liu; James R Lupski; Albert Beckers; Constantine A Stratakis
Journal:  N Engl J Med       Date:  2014-12-03       Impact factor: 91.245

8.  Whole-exome sequencing identifies homozygous GPR161 mutation in a family with pituitary stalk interruption syndrome.

Authors:  Ender Karaca; Ramazan Buyukkaya; Davut Pehlivan; Wu-Lin Charng; Kursat O Yaykasli; Yavuz Bayram; Tomasz Gambin; Marjorie Withers; Mehmed M Atik; Ilknur Arslanoglu; Semih Bolu; Serkan Erdin; Ayla Buyukkaya; Emine Yaykasli; Shalini N Jhangiani; Donna M Muzny; Richard A Gibbs; James R Lupski
Journal:  J Clin Endocrinol Metab       Date:  2015-01       Impact factor: 5.958

9.  The Reactome pathway knowledgebase.

Authors:  David Croft; Antonio Fabregat Mundo; Robin Haw; Marija Milacic; Joel Weiser; Guanming Wu; Michael Caudy; Phani Garapati; Marc Gillespie; Maulik R Kamdar; Bijay Jassal; Steven Jupe; Lisa Matthews; Bruce May; Stanislav Palatnik; Karen Rothfels; Veronica Shamovsky; Heeyeon Song; Mark Williams; Ewan Birney; Henning Hermjakob; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

10.  Deleterious mutation in GPR88 is associated with chorea, speech delay, and learning disabilities.

Authors:  Fadi Alkufri; Avraham Shaag; Bassam Abu-Libdeh; Orly Elpeleg
Journal:  Neurol Genet       Date:  2016-03-09
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  2 in total

1.  GPR88 is a critical regulator of feeding and body composition in mice.

Authors:  Jackie Lau; Aitak Farzi; Ronaldo F Enriquez; Yan-Chuan Shi; Herbert Herzog
Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

2.  Expression map of 78 brain-expressed mouse orphan GPCRs provides a translational resource for neuropsychiatric research.

Authors:  Aliza T Ehrlich; Grégoire Maroteaux; Anne Robe; Lydie Venteo; Md Taufiq Nasseef; Leon C van Kempen; Naguib Mechawar; Gustavo Turecki; Emmanuel Darcq; Brigitte L Kieffer
Journal:  Commun Biol       Date:  2018-08-06
  2 in total

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