Literature DB >> 28060363

Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments.

Marc Mußmann1,2, Petra Pjevac2, Karen Krüger1, Stefan Dyksma1.   

Abstract

To date, very little is known about the bacterial core community of marine sediments. Here we study the environmental distribution, abundance and ecogenomics of the gammaproteobacterial Woeseiaceae/JTB255 marine benthic group. A meta-analysis of published work shows that the Woeseiaceae/JTB255 are ubiquitous and consistently rank among the most abundant 16S rRNA gene sequences in diverse marine sediments. They account for up to 22% of bacterial amplicons and 6% of total cell counts in European and Australian coastal sediments. The analysis of a single-cell genome, metagenomic bins and the genome of the next cultured relative Woeseia oceani indicated a broad physiological range, including heterotrophy and facultative autotrophy. All tested (meta)genomes encode a truncated denitrification pathway to nitrous oxide. The broad range of energy-yielding metabolisms possibly explains the ubiquity and high abundance of Woeseiaceae/JTB255 in marine sediments, where they carry out diverse, but yet unknown ecological functions.

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Year:  2017        PMID: 28060363      PMCID: PMC5437919          DOI: 10.1038/ismej.2016.185

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  17 in total

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2.  Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean.

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Review 3.  Microbial ecology of the dark ocean above, at, and below the seafloor.

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Journal:  Int J Syst Evol Microbiol       Date:  2015-10-14       Impact factor: 2.747

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6.  Microbial communities associated with ferromanganese nodules and the surrounding sediments.

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Authors:  Daniel R H Graf; Christopher M Jones; Sara Hallin
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5.  Mapping Microbial Abundance and Prevalence to Changing Oxygen Concentration in Deep-Sea Sediments Using Machine Learning and Differential Abundance.

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Review 7.  The life sulfuric: microbial ecology of sulfur cycling in marine sediments.

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9.  Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems.

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10.  Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

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Journal:  Front Microbiol       Date:  2018-04-06       Impact factor: 5.640

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