Literature DB >> 28058681

Unique configuration of genes of silicon transporter in the freshwater pennate diatom Synedra acus subsp. radians.

A M Marchenkov1, A A Bondar2, D P Petrova3, K V Habudaev3, Yu P Galachyants3, Yu R Zakharova3, N A Volokitina3, M A Grachev3.   

Abstract

The existence of the cluster of duplicated sit silicon transporter genes in the chromosome of the diatom Synedra acus subsp. radians was shown for the first time. Earlier, the localization of sit genes in the same chromosome and cluster formation caused by gene duplication was shown only for the marine raphid pennate diatom P. tricornutum. Only non-clustered sit genes were found in the genomes of other diatoms. It is reasonable to assume that sit tandem (sit-td) and sit triplet (sit-tri) genes of S. acus subsp. radians occurred as a result of gene duplication followed by divergence of gene copies.

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Year:  2017        PMID： 28058681     DOI： 10.1134/S1607672916060089

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


  5 in total

1.  Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.

Authors:  Nikolai V Ravin; Yuri P Galachyants; Andrey V Mardanov; Alexey V Beletsky; Darya P Petrova; Tatyana A Sherbakova; Yuliya R Zakharova; Yelena V Likhoshway; Konstantin G Skryabin; Mikhail A Grachev
Journal:  Curr Genet       Date:  2010-03-23       Impact factor: 3.886

2.  Characterization of two circular plasmids from the marine diatom Cylindrotheca fusiformis: plasmids hybridize to chloroplast and nuclear DNA.

Authors:  J D Jacobs; J R Ludwig; M Hildebrand; A Kukel; T Y Feng; R W Ord; B E Volcani
Journal:  Mol Gen Genet       Date:  1992-05

3.  A gene family of silicon transporters.

Authors:  M Hildebrand; B E Volcani; W Gassmann; J I Schroeder
Journal:  Nature       Date:  1997-02-20       Impact factor: 49.962

4.  Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal.

Authors:  Y P Galachyants; Yu R Zakharova; D P Petrova; A A Morozov; I A Sidorov; A M Marchenkov; M D Logacheva; M L Markelov; K V Khabudaev; Ye V Likhoshway; M A Grachev
Journal:  Dokl Biochem Biophys       Date:  2015-05-05       Impact factor: 0.788

5.  Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.

Authors:  Guillaume Sapriel; Michelle Quinet; Marc Heijde; Laurent Jourdren; Véronique Tanty; Guangzuo Luo; Stéphane Le Crom; Pascal Jean Lopez
Journal:  PLoS One       Date:  2009-10-14       Impact factor: 3.240
  5 in total
  2 in total

1.  A family of silicon transporter structural genes in a pennate diatom Synedra ulna subsp. danica (Kütz.) Skabitsch.

Authors:  Artyom M Marchenkov; Darya P Petrova; Alexey A Morozov; Yulia R Zakharova; Michael A Grachev; Alexander A Bondar
Journal:  PLoS One       Date:  2018-08-29       Impact factor: 3.240

2.  De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal.

Authors:  Yuri Pavlovich Galachyants; Yulia Robertovna Zakharova; Nadezda Antonovna Volokitina; Alexey Anatolyevich Morozov; Yelena Valentinovna Likhoshway; Mikhail Aleksandrovich Grachev
Journal:  Sci Data       Date:  2019-09-27       Impact factor: 6.444
  2 in total

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