Literature DB >> 28057746

Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project.

Allison M Weis^1,2, Bihua C Huang^1,2, Dylan B Storey^1,2, Nguyet Kong^1,2, Poyin Chen^1,2, Narine Arabyan^1,2, Brent Gilpin³, Carl Mason⁴, Andrea K Townsend⁵, Woutrina A Smith¹, Barbara A Byrne¹, Conor C Taff⁵, Bart C Weimer^6,2.

Abstract

Campylobacter is a food-associated bacterium and a leading cause of foodborne illness worldwide, being associated with poultry in the food supply. This is the initial public release of 202 Campylobacter genome sequences as part of the 100K Pathogen Genome Project. These isolates represent global genomic diversity in the Campylobacter genus.

Entities: Chemical Disease Species

Year: 2017 PMID： 28057746 PMCID： PMC5255908 DOI： 10.1128/genomeA.00925-16

Source DB: PubMed Journal: Genome Announc

GENOME ANNOUNCEMENT

Campylobacter is the most common foodborne pathogen worldwide in humans and animals (1). Approximately 1.3 million people are infected in the United States yearly (2). Despite control efforts, outbreaks are increasing (2). Symptoms include fever, abdominal cramping, and bloody diarrhea, and in rare cases, infection leads to autoimmune disorders, such as Guillain-Barré syndrome (8). Infection is primarily from poultry but is also associated with domesticated livestock (3, 4) and wildlife (5–7). The 100K Pathogen Genome Project (http://www.100kgenomes.org) is a large-scale sequencing effort for worldwide isolates with a genome repository at the 100K Project BioProject at the NCBI (PRJNA186441). This project included the three most commonly identified species of Campylobacter: C. jejuni, C. lari, and C. coli. For an in-depth review of Campylobacter molecular biology and pathogenesis, see the papers by Silva et al. (9) and Young et al. (10). All Campylobacter isolates from the 100K Pathogen Genome Project were collected and banked in the laboratory of Bart Weimer (University of California, Davis, Davis, CA). Isolates were checked for purity and stored in liquid nitrogen (11). Genomic DNA (gDNA) was extracted from cultures grown on 5% blood agar plates (UC Davis, VetMed Biological Services) for one to two days, lysed (12), purified with a Qiagen QIAamp DNA minikit (catalog no. 51306), and analyzed on Agilent 2200 TapeStation system with the Genomic DNA ScreenTape assay for integrity of gDNA (13). After isolation, gDNA was fragmented using Diagenode Bioruptor next-generation sequencer (NGS) or Covaris E220 (14). Fragmented gDNA (1 μg) was used for library construction with the Kapa high-throughput (HTP) library preparation kit (catalog no. KK8234; Kapa Biosystems, Boston, MA), using the Agilent Bravo NGS workstation (Santa Clara, CA). Fragmented double-strand gDNA molecules were end-repaired (5′), adenylated (3′), and ligated with double-stranded DNA (dsDNA) adapters, either NEXTflex-96 DNA barcode (Bioo Scientific, Austin, TX), and multiplexed up to 96 isolates, or using Integrated DNA Technologies, Inc. Weimer 384 TS-LT DNA barcodes that allowed multiplexing up to 384 genomes. The standard Kapa protocol with dual-SPRI size selection was used for 250- to 500-bp fragments. Library amplification was done for eight cycles using the Kapa HiFi HotStart ReadyMix, followed by a 1× SPRI bead cleanup step. Size distribution of libraries was confirmed using Agilent 2100 Bioanalyzer system with high-sensitivity DNA kit (15, 16), and indexed libraries were quantified with quantitative PCR (qPCR)-based Kapa library quantification kit (catalog no. KK4824) prior to pooling for sequencing either on the Illumina HiSeq 2000 with PE100 plus index read at BGI@UCD (Sacramento, CA) or PE150 on the Illumina HiSeq 3000 at the UC Davis Genome Center (Davis, CA). Paired-end reads were assembled using ABySS 1.5.2 using k = 64 (17). All sample sequences are publicly available on the NCBI’s Sequence Read Archive (SRA) database (http://www.ncbi.nlm.nih.gov/sra), and genome assemblies can be found in NCBI GenBank. Here, the 100K Pathogen Genome Project has assembled 202 genomes from different isolates of Campylobacter identified as C. jejuni (167 genomes), C. coli (32 genomes), and C. lari (3 genomes) (Table 1).

TABLE 1

Species, isolate name, assembly data, and accession numbers of 202 Campylobacter genomes

GenBank accession no.	Isolate name	Species^a	No. of contigs	Total genome size (bp)	No. of CDSs^b
MJWB00000000	BCW_4453	C. coli	34	1,746,170	1,766
MJVZ00000000	BCW_4454	C. coli	46	1,983,591	2,062
MJWE00000000	BCW_4455	C. coli	43	1,872,803	1,937
MJWC00000000	BCW_4457	C. coli	37	1,834,436	1,893
MKAY00000000	BCW_4724	C. coli	31	1,711,767	1,724
MKCC00000000	BCW_5137	C. coli	25	1,725,970	1,742
MKAO00000000	BCW_5818	C. coli	48	1,837,036	1,907
MJYL00000000	BCW_5914	C. coli	53	1,819,402	1,890
MJWD00000000	BCW_5916	C. coli	32	1,828,621	1,894
MJWF00000000	BCW_5917	C. coli	37	1,823,469	1,893
MJVY00000000	BCW_5918	C. coli	40	1,964,242	2,043
MJWL00000000	BCW_6447	C. coli	32	1,861,852	1,912
MJWM00000000	BCW_6448	C. coli	31	1,857,061	1,912
MJWA00000000	BCW_6450	C. coli	48	1,983,760	2,061
MJYP00000000	BCW_6860	C. coli	48	1,731,589	1,766
MJZG00000000	BCW_6913	C. coli	41	1,812,371	1,882
MJZH00000000	BCW_6914	C. coli	43	1,827,738	1,884
MKEX00000000	BCW_6946	C. coli	46	1,828,827	1,893
MJZK00000000	BCW_6948	C. coli	35	1,740,538	1,767
MJZJ00000000	BCW_6949	C. coli	43	1,823,646	1,888
MJZL00000000	BCW_6950	C. coli	34	1,740,481	1,766
MJZM00000000	BCW_6951	C. coli	57	1,966,450	2,056
MJZP00000000	BCW_6955	C. coli	41	1,818,341	1,886
MJZR00000000	BCW_6957	C. coli	47	1,868,605	1,928
MJZS00000000	BCW_6958	C. coli	40	1,738,043	1,774
MJZU00000000	BCW_7432	C. coli	35	1,874,299	1,934
MJZV00000000	BCW_7433	C. coli	41	1,813,482	1,882
MJZW00000000	BCW_7434	C. coli	48	1,848,847	1,926
MJZX00000000	BCW_7435	C. coli	62	1,967,893	2,051
MJZY00000000	BCW_7437	C. coli	41	1,829,683	1,892
MKAA00000000	BCW_7460	C. coli	36	1,629,723	1,686
MKAB00000000	BCW_7692	C. coli	51	1,785,336	1,805
MEIB00000000	BCW_3781	C. jejuni	59	1,803,513	1,853
MJYK00000000	BCW_3782	C. jejuni	41	1,669,259	1,677
MEIC00000000	BCW_3784	C. jejuni	30	1,748,672	1,864
MJWO00000000	BCW_3785	C. jejuni	28	1,731,393	1,759
MJWP00000000	BCW_3786	C. jejuni	76	1,808,881	1,856
MJVF00000000	BCW_3787	C. jejuni	75	1,805,330	1,856
MJVG00000000	BCW_3788	C. jejuni	28	1,673,630	1,695
MJVH00000000	BCW_3789	C. jejuni	31	1,681,150	1,765
MJVI00000000	BCW_3790	C. jejuni	75	1,809,651	1,836
MJVJ00000000	BCW_3791	C. jejuni	141	2,006,566	2,034
MJVK00000000	BCW_3792	C. jejuni	74	1,809,576	1,833
MJVL00000000	BCW_3794	C. jejuni	63	1,759,193	1,775
MJVM00000000	BCW_3797	C. jejuni	31	1,699,040	1,676
MJVN00000000	BCW_3798	C. jejuni	53	1,744,518	1,751
MJVO00000000	BCW_3799	C. jejuni	55	1,768,431	1,783
MJVP00000000	BCW_3800	C. jejuni	70	1,832,983	1,840
MJVQ00000000	BCW_3802	C. jejuni	64	1,836,234	1,848
MJVR00000000	BCW_3803	C. jejuni	19	1,693,605	1,689
MKAL00000000	BCW_3804	C. jejuni	42	1,700,860	1,688
MJVS00000000	BCW_3805	C. jejuni	74	1,807,158	1,832
MJVT00000000	BCW_3807	C. jejuni	95	1,997,747	2,027
MJVU00000000	BCW_3810	C. jejuni	67	1,827,740	1,836
MJVV00000000	BCW_4216	C. jejuni	29	1,689,963	1,694
MKAM00000000	BCW_4218	C. jejuni	36	1,688,993	1,707
MJXR00000000	BCW_4219	C. jejuni	29	1,689,256	1,693
MJXS00000000	BCW_4220	C. jejuni	71	1,812,101	1,834
MJWI00000000	BCW_4221	C. jejuni	33	1,660,182	1,633
MJXT00000000	BCW_4222	C. jejuni	76	1,812,008	1,832
MJXU00000000	BCW_4223	C. jejuni	73	1,792,952	1,790
MJWH00000000	BCW_4224	C. jejuni	29	1,680,989	1,689
MJXV00000000	BCW_4225	C. jejuni	72	1,808,664	1,827
MJXW00000000	BCW_4226	C. jejuni	29	1,693,524	1,706
MJXX00000000	BCW_4228	C. jejuni	74	1,776,092	1,777
MJXY00000000	BCW_4229	C. jejuni	76	1,777,005	1,776
MJWJ00000000	BCW_4230	C. jejuni	34	1,670,410	1,639
MJXZ00000000	BCW_4231	C. jejuni	66	1,833,811	1,842
MKAW00000000	BCW_4317	C. jejuni	87	1,729,089	1,758
MKAQ00000000	BCW_4319	C. jejuni	18	1,662,736	1,639
MJYA00000000	BCW_4321	C. jejuni	67	1,840,105	1,882
MJYB00000000	BCW_4322	C. jejuni	67	1,806,657	1,837
MJYC00000000	BCW_4323	C. jejuni	88	1,736,882	1,756
MKET00000000	BCW_4324	C. jejuni	56	1,804,461	1,856
MJYD00000000	BCW_4325	C. jejuni	88	1,733,375	1,755
MJYE00000000	BCW_4326	C. jejuni	90	1,732,137	1,750
MKAN00000000	BCW_4328	C. jejuni	63	1,854,445	1,889
MJYF00000000	BCW_4332	C. jejuni	70	1,739,132	1,764
MJYG00000000	BCW_4333	C. jejuni	81	1,874,835	1,927
MJYH00000000	BCW_4335	C. jejuni	91	1,725,603	1,756
MJYI00000000	BCW_4337	C. jejuni	68	1,806,323	1,836
MJYJ00000000	BCW_4338	C. jejuni	66	1,807,200	1,840
MKAH00000000	BCW_4341	C. jejuni	55	1,773,112	1,773
MJWG00000000	BCW_4452	C. jejuni	25	1,800,178	1,850
MKAI00000000	BCW_4456	C. jejuni	30	1,724,619	1,726
MJWN00000000	BCW_4459	C. jejuni	55	1,942,729	2,031
MKAJ00000000	BCW_4460	C. jejuni	25	1,601,734	1,576
MKAK00000000	BCW_4461	C. jejuni	22	1,604,851	1,577
MKAZ00000000	BCW_4727	C. jejuni	13	1,678,985	1,684
MKBA00000000	BCW_4728	C. jejuni	41	1,712,512	1,743
MKBB00000000	BCW_4731	C. jejuni	32	1,698,127	1,731
MKBC00000000	BCW_4734	C. jejuni	34	1,684,111	1,732
MKBD00000000	BCW_4735	C. jejuni	35	1,837,130	1,892
MKBE00000000	BCW_4737	C. jejuni	36	1,642,302	1,692
MKBF00000000	BCW_4738	C. jejuni	40	1,748,256	1,788
MKBG00000000	BCW_4741	C. jejuni	172	1,819,989	1,970
MKBH00000000	BCW_4743	C. jejuni	18	1,644,315	1,648
MKBI00000000	BCW_4744	C. jejuni	61	1,654,980	1,715
MKBL00000000	BCW_4747	C. jejuni	22	1,718,223	1,720
MKBJ00000000	BCW_4748	C. jejuni	49	1,747,262	1,782
MKBK00000000	BCW_4749	C. jejuni	48	1,704,441	1,757
MKBM00000000	BCW_4753	C. jejuni	60	1,661,715	1,720
MKBN00000000	BCW_4755	C. jejuni	27	1,687,997	1,681
MKBO00000000	BCW_4757	C. jejuni	51	1,645,272	1,708
MKBP00000000	BCW_5121	C. jejuni	52	1,891,211	1,916
MKBQ00000000	BCW_5122	C. jejuni	94	1,846,320	1,949
MKBR00000000	BCW_5123	C. jejuni	60	1,722,506	1,797
MKBS00000000	BCW_5124	C. jejuni	66	1,673,066	1,727
MKBT00000000	BCW_5125	C. jejuni	49	1,774,518	1,808
MKBU00000000	BCW_5126	C. jejuni	69	1,815,843	1,883
MKBV00000000	BCW_5128	C. jejuni	116	1,797,324	1,868
MKBW00000000	BCW_5129	C. jejuni	58	1,703,448	1,777
MKBX00000000	BCW_5131	C. jejuni	120	1,775,968	1,880
MKBY00000000	BCW_5132	C. jejuni	38	1,694,325	1,735
MKBZ00000000	BCW_5133	C. jejuni	140	1,858,971	1,987
MKCA00000000	BCW_5135	C. jejuni	105	1,776,102	1,902
MKCB00000000	BCW_5136	C. jejuni	52	1,780,266	1,796
MKCD00000000	BCW_5140	C. jejuni	42	1,691,709	1,726
MKCE00000000	BCW_5141	C. jejuni	73	1,701,529	1,760
MKCF00000000	BCW_5143	C. jejuni	95	1,795,032	1,848
MKCG00000000	BCW_5144	C. jejuni	95	1,787,787	1,880
MKCH00000000	BCW_5145	C. jejuni	65	1,752,372	1,798
MKCI00000000	BCW_5146	C. jejuni	60	1,764,810	1,832
MKCJ00000000	BCW_5147	C. jejuni	130	1,721,583	1,824
MKCK00000000	BCW_5148	C. jejuni	42	1,670,278	1,703
MKCL00000000	BCW_5150	C. jejuni	98	1,794,347	1,876
MKCM00000000	BCW_5151	C. jejuni	53	1,683,276	1,727
MKEY00000000	BCW_5152	C. jejuni	41	1,685,669	1,721
MKEZ00000000	BCW_5154	C. jejuni	65	1,741,318	1,809
MKFA00000000	BCW_5155	C. jejuni	67	1,722,407	1,807
MKFB00000000	BCW_5156	C. jejuni	85	1,817,799	1,814
MKFC00000000	BCW_5157	C. jejuni	88	1,810,646	1,803
MKFD00000000	BCW_5158	C. jejuni	26	1,643,431	1,670
MKFE00000000	BCW_5159	C. jejuni	40	1,633,952	1,655
MKFF00000000	BCW_5160	C. jejuni	54	1,824,739	1,887
MKHS00000000	BCW_5161	C. jejuni	56	1,770,897	1,786
MKHT00000000	BCW_5162	C. jejuni	34	1,771,963	1,791
MKHU00000000	BCW_5166	C. jejuni	47	1,880,441	1,915
MKHV00000000	BCW_5167	C. jejuni	32	1,715,657	1,746
MKHW00000000	BCW_5170	C. jejuni	68	1,803,925	1,863
MKHX00000000	BCW_5171	C. jejuni	117	1,764,157	1,809
MKHY00000000	BCW_5172	C. jejuni	64	1,695,537	1,706
MKHZ00000000	BCW_5174	C. jejuni	98	1,757,175	1,779
MKES00000000	BCW_5913	C. jejuni	80	1,829,124	1,791
MJXA00000000	BCW_6451	C. jejuni	23	1,658,447	1,671
MJXB00000000	BCW_6452	C. jejuni	25	1,657,388	1,670
MJXC00000000	BCW_6453	C. jejuni	73	1,870,366	1,907
MJXD00000000	BCW_6454	C. jejuni	78	1,839,000	1,885
MJXE00000000	BCW_6456	C. jejuni	47	1,738,922	1,802
MJXF00000000	BCW_6457	C. jejuni	66	1,820,178	1,841
MJXG00000000	BCW_6458	C. jejuni	48	1,770,748	1,779
MJXH00000000	BCW_6459	C. jejuni	91	1,873,732	1,895
MJXI00000000	BCW_6460	C. jejuni	42	1,743,085	1,756
MJXJ00000000	BCW_6461	C. jejuni	28	1,724,268	1,755
MJXK00000000	BCW_6462	C. jejuni	45	1,762,804	1,774
MJXL00000000	BCW_6463	C. jejuni	80	1,810,501	1,847
MJXM00000000	BCW_6464	C. jejuni	89	1,874,875	1,906
MJXN00000000	BCW_6465	C. jejuni	113	1,898,179	1,918
MJXO00000000	BCW_6466	C. jejuni	75	1,856,101	1,908
MJXP00000000	BCW_6467	C. jejuni	52	1,706,044	1,706
MJXQ00000000	BCW_6468	C. jejuni	44	1,745,966	1,746
MJYM00000000	BCW_6475	C. jejuni	133	1,715,549	1,732
MJYN00000000	BCW_6476	C. jejuni	49	1,750,597	1,751
MJWQ00000000	BCW_6871	C. jejuni	83	1,838,932	1,893
MJWR00000000	BCW_6872	C. jejuni	38	1,727,268	1,728
MJWS00000000	BCW_6873	C. jejuni	114	1,864,402	1,881
MJWT00000000	BCW_6874	C. jejuni	116	1,864,348	1,871
MJWU00000000	BCW_6875	C. jejuni	40	1,737,054	1,756
MJWV00000000	BCW_6876	C. jejuni	39	1,798,356	1,914
MJWW00000000	BCW_6877	C. jejuni	65	1,866,607	1,905
MJWX00000000	BCW_6878	C. jejuni	114	1,862,090	1,875
MJWY00000000	BCW_6879	C. jejuni	31	1,633,912	1,684
MJYO00000000	BCW_6880	C. jejuni	40	1,684,005	1,685
MJYQ00000000	BCW_6881	C. jejuni	90	1,789,448	1,773
MJYR00000000	BCW_6882	C. jejuni	85	1,886,467	1,891
MJYS00000000	BCW_6883	C. jejuni	82	1,870,773	1,908
MKEW00000000	BCW_6884	C. jejuni	111	1,874,853	1,925
MJYT00000000	BCW_6885	C. jejuni	85	1,745,151	1,777
MJYU00000000	BCW_6886	C. jejuni	114	1,737,339	1,758
MKEV00000000	BCW_6887	C. jejuni	141	1,802,256	1,801
MJYV00000000	BCW_6888	C. jejuni	81	1,676,843	1,691
MJWZ00000000	BCW_6889	C. jejuni	81	1,944,460	2,003
MJYW00000000	BCW_6891	C. jejuni	83	1,751,933	1,778
MJYX00000000	BCW_6893	C. jejuni	57	1,770,259	1,778
MJYY00000000	BCW_6896	C. jejuni	120	1,625,057	1,606
MJYZ00000000	BCW_6897	C. jejuni	27	1,713,241	1,717
MJZA00000000	BCW_6898	C. jejuni	36	1,668,807	1,665
MJZB00000000	BCW_6899	C. jejuni	35	1,674,680	1,665
MJZC00000000	BCW_6900	C. jejuni	60	1,839,405	1,838
MJZD00000000	BCW_6901	C. jejuni	172	1,671,632	1,678
MKEU00000000	BCW_6902	C. jejuni	37	1,706,600	1,714
MJZE00000000	BCW_6904	C. jejuni	71	1,719,544	1,739
MKAP00000000	BCW_6907	C. jejuni	55	1,829,263	1,849
MJZF00000000	BCW_6910	C. jejuni	47	1,817,981	1,839
MJZN00000000	BCW_6953	C. jejuni	40	1,700,213	1,723
MJZO00000000	BCW_6954	C. jejuni	81	1,881,118	1,881
MJZQ00000000	BCW_6956	C. jejuni	57	1,783,446	1,795
MJZT00000000	BCW_6959	C. jejuni	48	1,699,337	1,726
MJZZ00000000	BCW_7438	C. jejuni	73	1,950,893	2,009
MJVX00000000	BCW_3783	C. lari	23	1,493,439	1,495
MJVW00000000	BCW_3793	C. lari	25	1,492,968	1,492
MJWK00000000	BCW_4217	C. lari	21	1,491,293	1,492

The average number of contigs, genome size, and number of coding sequences were 41.4, 1,828,002.30 bp, and 1,884 for C. coli; 63.8, 1,764,345.40 bp, and 1,792 for C. jejuni; and 23, 1,492,566.50 bp, and 1,493 for C. lari, respectively.

CDSs, coding sequences.

Species, isolate name, assembly data, and accession numbers of 202 Campylobacter genomes The average number of contigs, genome size, and number of coding sequences were 41.4, 1,828,002.30 bp, and 1,884 for C. coli; 63.8, 1,764,345.40 bp, and 1,792 for C. jejuni; and 23, 1,492,566.50 bp, and 1,493 for C. lari, respectively. CDSs, coding sequences.

Accession number(s).

Sequences can be found in the 100K Project BioProject at the NCBI SRA BioProject and in the NCBI Genbank. Accession numbers are presented in Table 1.

9 in total

1. ABySS: a parallel assembler for short read sequence data.

Authors: Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal: Genome Res Date: 2009-02-27 Impact factor: 9.043

2. Outbreak of campylobacteriosis associated with consumption of raw peas.

Authors: Tracie J Gardner; Collette Fitzgerald; Catherine Xavier; Ron Klein; Janet Pruckler; Steven Stroika; Joseph B McLaughlin
Journal: Clin Infect Dis Date: 2011-07-01 Impact factor: 9.079

Review 3. Human campylobacteriosis in developing countries.

Authors: Akitoye O Coker; Raphael D Isokpehi; Bolaji N Thomas; Kehinde O Amisu; C Larry Obi
Journal: Emerg Infect Dis Date: 2002-03 Impact factor: 6.883

4. Influence of Host Ecology and Behavior on Campylobacter jejuni Prevalence and Environmental Contamination Risk in a Synanthropic Wild Bird Species.

Authors: Conor C Taff; Allison M Weis; Sarah Wheeler; Mitchell G Hinton; Bart C Weimer; Christopher M Barker; Melissa Jones; Ryane Logsdon; Woutrina A Smith; Walter M Boyce; Andrea K Townsend
Journal: Appl Environ Microbiol Date: 2016-07-15 Impact factor: 4.792

Review 5. Campylobacter jejuni: molecular biology and pathogenesis.

Authors: Kathryn T Young; Lindsay M Davis; Victor J Dirita
Journal: Nat Rev Microbiol Date: 2007-09 Impact factor: 60.633

6. Occurrence and strain diversity of thermophilic campylobacters in cattle of different age groups in dairy herds.

Authors: E M Nielsen
Journal: Lett Appl Microbiol Date: 2002 Impact factor: 2.858

7. Prevalence and pathogenic potential of campylobacter isolates from free-living, human-commensal american crows.

Authors: Allison M Weis; Woutrina A Miller; Barbara A Byrne; Nadira Chouicha; Walter M Boyce; Andrea K Townsend
Journal: Appl Environ Microbiol Date: 2013-12-27 Impact factor: 4.792

8. Campylobacter spp. as a Foodborne Pathogen: A Review.

Authors: Joana Silva; Daniela Leite; Mariana Fernandes; Cristina Mena; Paul Anthony Gibbs; Paula Teixeira
Journal: Front Microbiol Date: 2011-09-27 Impact factor: 5.640

Review 9. Campylobacter jejuni--an emerging foodborne pathogen.

Authors: S F Altekruse; N J Stern; P I Fields; D L Swerdlow
Journal: Emerg Infect Dis Date: 1999 Jan-Feb Impact factor: 6.883

9 in total

11 in total

Review 1. The Current State of Macrolide Resistance in Campylobacter spp.: Trends and Impacts of Resistance Mechanisms.

Authors: Hannah Bolinger; Sophia Kathariou
Journal: Appl Environ Microbiol Date: 2017-05-31 Impact factor: 4.792

2. 100K Pathogen Genome Project.

Authors: Bart C Weimer
Journal: Genome Announc Date: 2017-07-13

3. Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2.

Authors: Narine Arabyan; Allison M Weis; Bihua C Huang; Bart C Weimer
Journal: Genome Announc Date: 2017-05-11

4. Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors.

Authors: Narine Arabyan; Bihua C Huang; Bart C Weimer
Journal: Genome Announc Date: 2017-08-03

5. Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains.

Authors: Narine Arabyan; Bihua C Huang; Bart C Weimer
Journal: Genome Announc Date: 2017-05-18

10. Analysis of SARS-CoV-2 genomic epidemiology reveals disease transmission coupled to variant emergence and allelic variation.

Authors: D J Darwin R Bandoy; Bart C Weimer
Journal: Sci Rep Date: 2021-04-01 Impact factor: 4.379