| Literature DB >> 28056875 |
Nesrin Besbas1, Bora Gulhan1, Oguz Soylemezoglu2, Z Birsin Ozcakar3, Emine Korkmaz1, Mutlu Hayran4, Fatih Ozaltin5.
Abstract
BACKGROUND: Atypical hemolytic uremic syndrome (aHUS) is a devastating disease with significant morbidity and mortality. Its genetic heterogeneity impacts its clinical presentation, progress, and outcome, and there is no consensus on its clinical management.Entities:
Keywords: Atypical hemolytic uremic syndrome; Outcome; Prognosis; Treatment; Turkish registry
Mesh:
Substances:
Year: 2017 PMID: 28056875 PMCID: PMC5217238 DOI: 10.1186/s12882-016-0420-6
Source DB: PubMed Journal: BMC Nephrol ISSN: 1471-2369 Impact factor: 2.388
Demographic and clinical characteristics of 146 patients with aHUS
| Male (%) / Female (%) | 62 (42.4) / 84 (57.6) |
|---|---|
| Current age, years | |
| Mean (SD) | 7.98 (5.0) |
| Median (IQR) | 6.53 (3.8–11) |
| Age at diagnosis, years | |
| Mean (SD) | 4.82 (4.4) |
| Median (IQR) | 3.5 (1.2–7.4) |
| Age category (years) at the time of diagnosis, n (%) | |
| <2 | 53 (36.3) |
| 2 to <5 | 40 (27.4) |
| 5 to <12 | 38 (26) |
| ≥12 | 15 (10.3) |
| Duration of follow-up (years) | |
| Mean (SD) | 2.9 (2.5) |
| Median (IQR) | 2.1 (1.2–3.8) |
| Consanguinity (%) | 42 (28.8) |
| Family history of aHUS (%) | 7 (4.8) |
| Anuria (%) /oliguria at admission (%) | 41 (28) / 67 (45.8) |
| Duration of anuria at admission (days) | |
| Mean (SD) | 6.3 (4.5) |
| Median (IQR) | 5 (2–10) |
| Duration of oliguria at admission (days) | |
| Mean (SD) | 6 (6.8) |
| Median (IQR) | 3 (2–7) |
| Extrarenal involvement, n (%) | 61 (41.7) |
| Central nervous system | 41 (28.1) |
| Gastrointestinal system | 16 (10.9) |
| Cardiac | 9 (6.1) |
| Respiratory system | 10 (6.8) |
| Patients with GFR <90 mL/min/1.73 m2 at admission, n (%) | 139 (95.2) |
| Hypocomplementemia (%)a | 66 (48.5) |
| Renal biopsy at admission (%) | 44 (30.1%) |
SD: standard deviation; IQR: interquartile range; aHUS: atypical hemolytic uremic syndrome; GFR: glomerular filtration rate. aData is available for 136 patients
Genetic results of the patients
| Gene | Screened n (%)a | Variation n (%)b | Variant (dbSNP database) | Predicted aminoacid change | Zygosity | MAF_1000G | MAF_ESP 6500 | SIFT predictionc (score) | PolyPhen predictiond (score) | Mutation Taster predictione (score) | HSF predictionf | Ref |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| ||||||||||||
| 64 (56.6) | 5 (7.8) | |||||||||||
| c.3530A>G | p.Tyr1177Cys | Hom | NR | NR | Tolarated (0.19) | Probably damaging (0.996) | Polymorphism (0.99) | NA | [ | |||
| c.2850G>T (rs149474608) | p.Gln950His | Het | <0.01 | <0.01 | Deleterious (0.049) | Probably damaging (0.96) | Polymorphism (0.99) | NA | [ | |||
| c.2127_2129del | p.Tyr711del | Het | NR | NR | NA | NA | Disease causing (0.54) | NA | Novel | |||
| c.3148A>T (rs35274867) | p.Asn1050Tyr | Het | 0.01 | 0.01 | Tolarated (0.08) | Benign (0.016) | Polymorphism (0.99) | NA | [ | |||
| c.3133+1G>A | Splice site | Het | NR | NR | NA | NA | N/A | Broken WT Donor Site | Novel | |||
|
| ||||||||||||
| 69 (61.0) | 1 (1.4) | |||||||||||
| c.608C>T (rs138346388) | p.Thr203Ile | Het | <0.01 | <0.01 | Tolarated (0.16) | Benign (0.051) | Polymorphism (0.99) | NA | [ | |||
|
| ||||||||||||
| 49 (43.3) | 7 (14.2) | |||||||||||
| c.535G>C (rs779174212) | p.Glu179Gln | Hom | <0.01 | <0.01 | Tolarated (0.33) | Benign (0.023) | Polymorphism (0.99) | NA | [ | |||
| c.841C>T | p.Pro281Ser | Hom | NR | NR | Damaging (0) | Probably damaging (0.99) | Disease causing (0.85) | NA | Novel | |||
| c.841C>T | p.Pro281Ser | Het | NR | NR | Damaging (0) | Probably damaging (0.99) | Disease causing (0.85) | NA | Novel | |||
| c.476-2A>G | Splice site | Hom | NR | NR | NA | NA | NA | Broken WT Acceptor Site | Novel | |||
| c.476-2A>G | Splice site | Hom | NR | NR | NA | NA | NA | Broken WT Acceptor Site | Novel | |||
| c.286+2T>G | Splice site | Hom | NR | NR | NA | NA | NA | Broken WT Donor Site | [ | |||
| c.1027+5G>T | Splice site | Hom | NR | NR | NA | NA | NA | Broken WT Donor Site | [ | |||
|
| ||||||||||||
| 62 (54.8) | 1 (1.6) | |||||||||||
| c.125T>C | p.Val42Ala | Het | NR | NR | Tolarated (0.19) | Benign (0.12) | Disease causing (0.94) | NA | Novel | |||
|
| ||||||||||||
| 35 (30.9) | 4 (11.4) | |||||||||||
| c.537_539del | p.Leu180del | Het | NR | NR | NA | NA | Polymorphism (0.99) | NA | Novel | |||
| c.3125G>T | p.Arg1042Leu | Het | NR | NR | Damaging (0.03) | Probably damaging (0.99) | Disease causing (0.99) | NA | [ | |||
| c.4148C>A (rs139100972) | p.Thr1383Asn | Het | NR | <0.01 | Tolarated (0.5) | Benign (0.36) | Polymorphism (0.99) | NA | [ | |||
| c.1976-6C>T | Splice site | Het | NR | NR | NA | NA | NA | Probably no impact | Novel | |||
|
| ||||||||||||
| 67 (59.2) | 6 (8.9) | |||||||||||
| c. 1009C>T (rs762576212) | p.Arg337Stop | Hom | NR | <0.01 | NA | NA | Disease causing (1) | NA | in dbSNP | |||
| c.118_121dup | p.Ser41Metfs*2 | Hom | NR | NR | NA | NA | Disease causing (1) | NA | Novel | |||
| c.607_610del | p.Lys203Glnfs*6 | Hom | NR | NR | NA | NA | Disease causing (1) | NA | Novel | |||
| c.263_264insGGG | p.Asp88Glufs*84 | C-Het | NR | NR | NA | NA | Disease causing | NA | Novel | |||
| CGCCA/c.76del | p.Thr26Argfs*143 | NR | NR | NA | NA | Disease causing | Novel | |||||
| c. 427C>T | p.Gln143Stop | C-Het | NR | NR | NA | NA | Disease causing | NA | Novel | |||
| c.1133C>G | p.Pro378Arg | NR | <0.01 | Damaging (0) | Possibly damaging (0.93) | Disease causing (1) | Novel | |||||
| c.793A>C | p.Thr265Pro | Het | NR | NR | Tolarated (0.08) | Benign (0.43) | Disease causing (0.99) | NA | Novel | |||
|
| ||||||||||||
|
| c.3644G>A (rs121913051) | p.Arg1215Gln | Het | NR | NR | Tolarated (0.19) | Probably damaging (0.99) | Polymorphism (0.99) | NA | [ | ||
| CFB | c.1135C>T | p.Arg379Cys | Het | NR | NR | Damaging (0.01) | Probably damaging (0.99) | Polymorphism (0.97) | NA | Novel | ||
| CFB | c.1050G>T | p.Lys350Asn | C-Het | NR | NR | T olarated (0.14) | Probably damaging (0.99) | Polymorphism (0.81) | NA | [ | ||
| c.1697A>C (rs45484591) | p.Glu566Ala | 0.01 | 0 . 0 1 | Tolarated (0.73) | Benign (0) | Polymorphism (0.99) | NA | [ | ||||
| Heterozygous CFHR1-3 deletion | ||||||||||||
| CFB | c.397G>A | p.Asp133Asn | Het | NR | NR | Damaging (0.05) | Benign (0.014) | Polymorphism (0.7) | NA | Novel | ||
| Anti-CFH antibody associated with homozygous CFHR1-3 deletion | ||||||||||||
|
| c.53dup | p.Glu19Argfs*6 | Het | NR | NR | NA | NA | Disease causing (1) | NA | Novel | ||
| Anti-CFH antibody associated with homozygous CFHR1-3 deletion | ||||||||||||
aof the 113 patients whose DNA samples were avaliable, bof the analyses that were performed
cSorting Tolerant From Intolerant (SIFT) (http://sift.jcvi.org); dPolymorphism Phenotyping v2 (http://genetics.bwh.harvard.edu/pph2/index.shtml);
eMutation taster (http://www.mutationtaster.org);fHuman Splicing Finder (http://www.umd.be/HSF3/index.html)
Variations and predicted aminoacid changes have been named according to the guidelines of the Human Genome Variation Society using Mutalyzer software (https://mutalyzer.nl)
C-Het, compound heterozygous; Het, heterozygous; Hom, homozygous; NA, not applicable; NR, not reported; WT, wild-type
MAF-1000G, minor allele frequency based on 1000 Genomes Project
MAF-6500, minor allele frequency based on 6503 samples collected at NHLBI Exome Sequencing Project and data from 60.706 individuals aggregated by the Exome Aggregation
Consortium (ExAC; http://exac.broadinstitute.org); (accessed October 2016)
Follow-up characteristics of patients (n = 130)
| Age at diagnosis, years | |
| Mean (SD) | 4.8 (4.4) |
| Median (IQR) | 3.5 (1.2–7.1) |
| Duration of follow-up (years) | |
| Mean (SD) | 2.8 (2.3) |
| Median (IQR) | 2.1 (1.2–3.7) |
| Renal replacement therapya, n (%) | 13 (10) |
| GFR (mL/min/1.73 m2) at the last visit, n (%) | |
| >90 | 101 (77.7) |
| 60–89 | 14 (10.8) |
| 30–59 | 6 (4.6) |
| 15–29 | 3 (2.3) |
| 0–14 | 6 (4.6) |
SD standard deviation, IQR interquartile range, GFR glomerular filtration rate
aIncludes hemodialysis, peritoneal dialysis, and renal transplantation