Literature DB >> 28032403

A unique large-scale undergraduate research experience in molecular systems biology for non-mathematics majors.

Ulrike Kappler1, Susan L Rowland1,2, Rhianna K Pedwell1.   

Abstract

Systems biology is frequently taught with an emphasis on mathematical modeling approaches. This focus effectively excludes most biology, biochemistry, and molecular biology students, who are not mathematics majors. The mathematical focus can also present a misleading picture of systems biology, which is a multi-disciplinary pursuit requiring collaboration between biochemists, bioinformaticians, and mathematicians. This article describes an authentic large-scale undergraduate research experience (ALURE) in systems biology that incorporates proteomics, bacterial genomics, and bioinformatics in the one exercise. This project is designed to engage students who have a basic grounding in protein chemistry and metabolism and no mathematical modeling skills. The pedagogy around the research experience is designed to help students attack complex datasets and use their emergent metabolic knowledge to make meaning from large amounts of raw data. On completing the ALURE, participants reported a significant increase in their confidence around analyzing large datasets, while the majority of the cohort reported good or great gains in a variety of skills including "analysing data for patterns" and "conducting database or internet searches." An environmental scan shows that this ALURE is the only undergraduate-level system-biology research project offered on a large-scale in Australia; this speaks to the perceived difficulty of implementing such an opportunity for students. We argue however, that based on the student feedback, allowing undergraduate students to complete a systems-biology project is both feasible and desirable, even if the students are not maths and computing majors.
© 2016 by The International Union of Biochemistry and Molecular Biology, 45(3):235-248, 2017. © 2016 The International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  Curriculum design development and implementation; genomics proteomics bioinformatics; integration of research into undergraduate teaching; laboratory exercises; metabolic pathways and regulation; systems biology

Mesh:

Year:  2016        PMID: 28032403     DOI: 10.1002/bmb.21033

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  3 in total

1.  Training for translation between disciplines: a philosophy for life and data sciences curricula.

Authors:  K Anton Feenstra; Sanne Abeln; Johan A Westerhuis; Filipe Brancos Dos Santos; Douwe Molenaar; Bas Teusink; Huub C J Hoefsloot; Jaap Heringa
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

2.  A Course-Based Undergraduate Research Experience (CURE) in Biology: Developing Systems Thinking through Field Experiences in Restoration Ecology.

Authors:  Erin Stanfield; Corin D Slown; Quentin Sedlacek; Suzanne E Worcester
Journal:  CBE Life Sci Educ       Date:  2022-06       Impact factor: 3.955

3.  Mass Spectrometry as a Tool to Enhance "-omics" Education.

Authors:  Michael J Wolyniak; Nathan S Reyna; Ruth Plymale; Welkin H Pope; Daniel E Westholm
Journal:  J Microbiol Biol Educ       Date:  2018-02-16
  3 in total

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