Literature DB >> 28031253

Global snapshots of bacterial RNA networks.

Jens Hör1, Jörg Vogel1,2.   

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Year:  2016        PMID： 28031253      PMCID： PMC5286387          DOI： 10.15252/embj.201696072

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  13 in total

1.  Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions.

Authors:  Alexander J Westermann; Konrad U Förstner; Fabian Amman; Lars Barquist; Yanjie Chao; Leon N Schulte; Lydia Müller; Richard Reinhardt; Peter F Stadler; Jörg Vogel
Journal:  Nature       Date:  2016-01-20       Impact factor: 49.962

2.  Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast.

Authors:  Grzegorz Kudla; Sander Granneman; Daniela Hahn; Jean D Beggs; David Tollervey
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-24       Impact factor: 11.205

3.  A 3' external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise.

Authors:  David Lalaouna; Marie-Claude Carrier; Szabolcs Semsey; Jean-Simon Brouard; Jing Wang; Joseph T Wade; Eric Massé
Journal:  Mol Cell       Date:  2015-04-16       Impact factor: 17.970

4.  GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation.

Authors:  Kook Han; Brian Tjaden; Stephen Lory
Journal:  Nat Microbiol       Date:  2016-12-22       Impact factor: 17.745

5.  Global Mapping of Small RNA-Target Interactions in Bacteria.

Authors:  Sahar Melamed; Asaf Peer; Raya Faigenbaum-Romm; Yair E Gatt; Niv Reiss; Amir Bar; Yael Altuvia; Liron Argaman; Hanah Margalit
Journal:  Mol Cell       Date:  2016-09-01       Impact factor: 17.970

6.  Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

Authors:  Shafagh A Waters; Sean P McAteer; Grzegorz Kudla; Ignatius Pang; Nandan P Deshpande; Timothy G Amos; Kai Wen Leong; Marc R Wilkins; Richard Strugnell; David L Gally; David Tollervey; Jai J Tree
Journal:  EMBO J       Date:  2016-11-11       Impact factor: 11.598

7.  In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Authors:  Yanjie Chao; Lei Li; Dylan Girodat; Konrad U Förstner; Nelly Said; Colin Corcoran; Michał Śmiga; Kai Papenfort; Richard Reinhardt; Hans-Joachim Wieden; Ben F Luisi; Jörg Vogel
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

8.  The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.

Authors:  Katarzyna J Bandyra; Nelly Said; Verena Pfeiffer; Maria W Górna; Jörg Vogel; Ben F Luisi
Journal:  Mol Cell       Date:  2012-08-16       Impact factor: 17.970

9.  Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli.

Authors:  Jai J Tree; Sander Granneman; Sean P McAteer; David Tollervey; David L Gally
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

10.  Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo.

Authors:  Erik Holmqvist; Patrick R Wright; Lei Li; Thorsten Bischler; Lars Barquist; Richard Reinhardt; Rolf Backofen; Jörg Vogel
Journal:  EMBO J       Date:  2016-04-04       Impact factor: 11.598
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  7 in total

1.  Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation.

Authors:  Ira Alexandra Iosub; Robert Willem van Nues; Stuart William McKellar; Karen Jule Nieken; Marta Marchioretto; Brandon Sy; Jai Justin Tree; Gabriella Viero; Sander Granneman
Journal:  Elife       Date:  2020-05-01       Impact factor: 8.140

Review 2.  RNA search engines empower the bacterial intranet.

Authors:  Tom Dendooven; Ben F Luisi
Journal:  Biochem Soc Trans       Date:  2017-07-14       Impact factor: 5.407

Review 3.  Discovering RNA-Based Regulatory Systems for Yersinia Virulence.

Authors:  Vanessa Knittel; Ines Vollmer; Marcel Volk; Petra Dersch
Journal:  Front Cell Infect Microbiol       Date:  2018-10-25       Impact factor: 5.293

Review 4.  Insights Into Non-coding RNAs as Novel Antimicrobial Drugs.

Authors:  Gisela Parmeciano Di Noto; María Carolina Molina; Cecilia Quiroga
Journal:  Front Genet       Date:  2019-02-22       Impact factor: 4.599

Review 5.  An overview of gene regulation in bacteria by small RNAs derived from mRNA 3' ends.

Authors:  Falk Ponath; Jens Hör; Jörg Vogel
Journal:  FEMS Microbiol Rev       Date:  2022-09-02       Impact factor: 15.177

6.  Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study.

Authors:  Mia K Mihailovic; Alyssa M Ekdahl; Angela Chen; Abigail N Leistra; Bridget Li; Javier González Martínez; Matthew Law; Cindy Ejindu; Éric Massé; Peter L Freddolino; Lydia M Contreras
Journal:  Front Cell Infect Microbiol       Date:  2021-07-13       Impact factor: 6.073

7.  The Transcriptomic Landscape of Cupriavidus metallidurans CH34 Acutely Exposed to Copper.

Authors:  Laurens Maertens; Natalie Leys; Jean-Yves Matroule; Rob Van Houdt
Journal:  Genes (Basel)       Date:  2020-09-04       Impact factor: 4.096
  7 in total

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