Literature DB >> 28029786

Wang-Landau Reaction Ensemble Method: Simulation of Weak Polyelectrolytes and General Acid-Base Reactions.

Jonas Landsgesell1, Christian Holm1, Jens Smiatek1.   

Abstract

We present a novel method for the study of weak polyelectrolytes and general acid-base reactions in molecular dynamics and Monte Carlo simulations. The approach combines the advantages of the reaction ensemble and the Wang-Landau sampling method. Deprotonation and protonation reactions are simulated explicitly with the help of the reaction ensemble method, while the accurate sampling of the corresponding phase space is achieved by the Wang-Landau approach. The combination of both techniques provides a sufficient statistical accuracy such that meaningful estimates for the density of states and the partition sum can be obtained. With regard to these estimates, several thermodynamic observables like the heat capacity or reaction free energies can be calculated. We demonstrate that the computation times for the calculation of titration curves with a high statistical accuracy can be significantly decreased when compared to the original reaction ensemble method. The applicability of our approach is validated by the study of weak polyelectrolytes and their thermodynamic properties.

Year:  2017        PMID: 28029786     DOI: 10.1021/acs.jctc.6b00791

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

Review 1.  Theoretical and Computational Insight into Solvent and Specific Ion Effects for Polyelectrolytes: The Importance of Local Molecular Interactions.

Authors:  Jens Smiatek
Journal:  Molecules       Date:  2020-04-03       Impact factor: 4.411

2.  pH-Induced Changes in Polypeptide Conformation: Force-Field Comparison with Experimental Validation.

Authors:  Piotr Batys; Maria Morga; Piotr Bonarek; Maria Sammalkorpi
Journal:  J Phys Chem B       Date:  2020-03-26       Impact factor: 2.991

  2 in total

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