Literature DB >> 28028006

Identification and analysis of the human sex-biased genes.

Sisi Guo1, Yuan Zhou1, Pan Zeng1, Guoheng Xu1, Guoqing Wang2, Qinghua Cui1.   

Abstract

Tremendous differences between human sexes are universally observed. Therefore, identifying and analyzing the sex-biased genes are becoming basically important for uncovering the mystery of sex differences and personalized medicine. Here, we presented a computational method to identify sex-biased genes from public gene expression databases. We obtained 1407 female-biased genes (FGs) and 1096 male-biased genes (MGs) across 14 different tissues. Bioinformatics analysis revealed that compared with MGs, FGs have higher evolutionary rate, higher single-nucleotide polymorphism density, less homologous gene numbers and smaller phyletic age. FGs have lower expression level, higher tissue specificity and later expressed stage in body development. Moreover, FGs are highly involved in immune-related functions, whereas MGs are more enriched in metabolic process. In addition, cellular network analysis revealed that MGs have higher degree, more cellular activating signaling and tend to be located in cellular inner space, whereas FGs have lower degree, more cellular repressing signaling and tend to be located in cellular outer space. Finally, the identified sex-biased genes and the discovered biological insights together can be a valuable resource helpful for investigating sex-biased physiology and medicine, for example sex-biased disease diagnosis and therapy, which represents one important aspect of personalized and precision medicine.

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Year:  2018        PMID: 28028006     DOI: 10.1093/bib/bbw125

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  7 in total

1.  Comparative analysis of genes frequently regulated by drugs based on connectivity map transcriptome data.

Authors:  Xinhua Liu; Pan Zeng; Qinghua Cui; Yuan Zhou
Journal:  PLoS One       Date:  2017-06-02       Impact factor: 3.240

2.  Large-scale in silico identification of drugs exerting sex-specific effects in the heart.

Authors:  Changting Cui; Chuanbo Huang; Kejia Liu; Guoheng Xu; Jichun Yang; Yong Zhou; Yingmei Feng; Georgios Kararigas; Bin Geng; Qinghua Cui
Journal:  J Transl Med       Date:  2018-08-29       Impact factor: 5.531

3.  Identifying potential drug targets in hepatocellular carcinoma based on network analysis and one-class support vector machine.

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Journal:  Sci Rep       Date:  2019-07-18       Impact factor: 4.379

4.  A New Metric Quantifying Chemical and Biological Property of Small Molecule Metabolites and Drugs.

Authors:  Chuanbo Huang; Yuan Zhou; Jichun Yang; Qinghua Cui; Yanhui Li
Journal:  Front Mol Biosci       Date:  2020-12-15

5.  The relationship between sexual dimorphism and androgen response element proliferation in primate genomes.

Authors:  Andrew P Anderson; Adam G Jones
Journal:  Evolution       Date:  2022-04-25       Impact factor: 4.171

6.  Identification and Analysis of Human Sex-biased MicroRNAs.

Authors:  Chunmei Cui; Weili Yang; Jiangcheng Shi; Yong Zhou; Jichun Yang; Qinghua Cui; Yuan Zhou
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-07-11       Impact factor: 7.691

7.  Endogenous controls and microRNA profile in female patients with obstructive sleep apnea.

Authors:  Andrea Zapater; Iván D Benítez; Fernando Santamaria-Martos; Lucía Pinilla; Adriano Targa; David De Gonzalo-Calvo; Gerard Torres; Olga Mínguez; Anunciación Cortijo; Mireia Dalmases; Ferrán Barbé; Manuel Sánchez-de-la-Torre
Journal:  Sci Rep       Date:  2022-02-03       Impact factor: 4.379

  7 in total

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