Literature DB >> 28026944

MDANSE: An Interactive Analysis Environment for Molecular Dynamics Simulations.

G Goret1, B Aoun1, E Pellegrini1.   

Abstract

The MDANSE software-Molecular Dynamics Analysis of Neutron Scattering Experiments-is presented. It is an interactive application for postprocessing molecular dynamics (MD) simulations. Given the widespread use of MD simulations in material and biomolecular sciences to get a better insight for experimental techniques such as thermal neutron scattering (TNS), the development of MDANSE has focused on providing a user-friendly, interactive, graphical user interface for analyzing many trajectories in the same session and running several analyses simultaneously independently of the interface. This first version of MDANSE already proposes a broad range of analyses, and the application has been designed to facilitate the introduction of new analyses in the framework. All this makes MDANSE a valuable tool for extracting useful information from trajectories resulting from a wide range of MD codes.

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Year:  2017        PMID: 28026944     DOI: 10.1021/acs.jcim.6b00571

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  6 in total

1.  Insight into Design of Improved Oxide Ion Conductors: Dynamics and Conduction Mechanisms in the Bi0.913V0.087O1.587 Solid Electrolyte.

Authors:  Joseph R Peet; Chloe A Fuller; Bernhard Frick; Michael M Koza; Mark R Johnson; Andrea Piovano; Ivana Radosavljevic Evans
Journal:  J Am Chem Soc       Date:  2019-06-13       Impact factor: 15.419

Review 2.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

3.  Linking Structure to Dynamics in Protic Ionic Liquids: A Neutron Scattering Study of Correlated and Single-Particle Motions.

Authors:  Tatsiana Burankova; Juan F Mora Cardozo; Daniel Rauber; Andrew Wildes; Jan P Embs
Journal:  Sci Rep       Date:  2018-11-06       Impact factor: 4.379

4.  Evidence of a low-temperature dynamical transition in concentrated microgels.

Authors:  Marco Zanatta; Letizia Tavagnacco; Elena Buratti; Monica Bertoldo; Francesca Natali; Ester Chiessi; Andrea Orecchini; Emanuela Zaccarelli
Journal:  Sci Adv       Date:  2018-09-28       Impact factor: 14.136

5.  Effects of Ga Substitution on the Local Structure of Na2Zn2TeO6.

Authors:  Frida Sveen Hempel; Federico Bianchini; Bjørnar Arstad; Helmer Fjellvåg
Journal:  Inorg Chem       Date:  2022-08-09       Impact factor: 5.436

6.  Self-Diffusive Properties of the Intrinsically Disordered Protein Histatin 5 and the Impact of Crowding Thereon: A Combined Neutron Spectroscopy and Molecular Dynamics Simulation Study.

Authors:  Eric Fagerberg; Samuel Lenton; Tommy Nylander; Tilo Seydel; Marie Skepö
Journal:  J Phys Chem B       Date:  2022-01-19       Impact factor: 2.991

  6 in total

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