Adam D Swick1, Andrew P Stein1, Timothy M McCulloch2, Gregory K Hartig2, Irene M Ong3, Emmanuel Sampene4, Prashanth J Prabakaran1, Cheng Z Liu5, Randall J Kimple6. 1. Department of Human Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. 2. Department of Otolaryngology, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA; University of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. 3. Department of Biostatistics and Medical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA; University of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. 4. Department of Biostatistics and Medical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. 5. Department of Pathology, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. 6. Department of Human Oncology, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA; University of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. Electronic address: rkimple@humonc.wisc.edu.
Abstract
BACKGROUND: Patient derived xenografts (PDXs) represent an essential tool in oncologic research, and we sought to further expand our repertoire of head and neck squamous cell carcinoma (HNSCC) while determining potential boundaries for this system. METHODS: We consented new patients for PDX development and determined if a 24-h time delay from tumor excision to xenograft implantation affected PDX establishment. We developed a tissue microarray (TMA) from formalin fixed, paraffin embedded PDXs and their subsequent passages and carried out quantitative immunohistochemistry for EGFR, pEGFR, pAkt, pERK and ERCC1. First and last passaged PDXs were compared via a paired t-test to examine for the stability of protein expression across passages. We performed a similar comparison of the mutational profile of the patient tumor and resulting xenografts using a targeted sequencing approach. RESULTS: No patient/tumor characteristics influenced PDX take rate and the 24-h time delay from tumor excision to xenograft implantation did not affect PDX establishment, growth or histology. There was no significant difference in biomarker expression between the first and last passaged PDXs for EGFR, pEGFR, pAkt, and ERCC1. For pERK there was a significant difference (p=0.002), but further analysis demonstrated this only arose in three of 15 PDXs. Targeted sequencing revealed striking stability of passenger and likely driver mutations from patient to xenograft. CONCLUSIONS: The stability of protein expression across PDX passages will hopefully allow greater investigation of predictive biomarkers in order to identify ones for further pre-clinical and clinical investigation.
BACKGROUND:Patient derived xenografts (PDXs) represent an essential tool in oncologic research, and we sought to further expand our repertoire of head and neck squamous cell carcinoma (HNSCC) while determining potential boundaries for this system. METHODS: We consented new patients for PDX development and determined if a 24-h time delay from tumor excision to xenograft implantation affected PDX establishment. We developed a tissue microarray (TMA) from formalin fixed, paraffin embedded PDXs and their subsequent passages and carried out quantitative immunohistochemistry for EGFR, pEGFR, pAkt, pERK and ERCC1. First and last passaged PDXs were compared via a paired t-test to examine for the stability of protein expression across passages. We performed a similar comparison of the mutational profile of the patienttumor and resulting xenografts using a targeted sequencing approach. RESULTS: No patient/tumor characteristics influenced PDX take rate and the 24-h time delay from tumor excision to xenograft implantation did not affect PDX establishment, growth or histology. There was no significant difference in biomarker expression between the first and last passaged PDXs for EGFR, pEGFR, pAkt, and ERCC1. For pERK there was a significant difference (p=0.002), but further analysis demonstrated this only arose in three of 15 PDXs. Targeted sequencing revealed striking stability of passenger and likely driver mutations from patient to xenograft. CONCLUSIONS: The stability of protein expression across PDX passages will hopefully allow greater investigation of predictive biomarkers in order to identify ones for further pre-clinical and clinical investigation.
Authors: Belen Rubio-Viqueira; Antonio Jimeno; George Cusatis; Xianfeng Zhang; Christine Iacobuzio-Donahue; Collins Karikari; Chanjusn Shi; Kathleen Danenberg; Peter V Danenberg; Hidekazu Kuramochi; Koji Tanaka; Sharat Singh; Hossein Salimi-Moosavi; Nadia Bouraoud; Maria L Amador; Soner Altiok; Piotr Kulesza; Charles Yeo; Wells Messersmith; James Eshleman; Ralph H Hruban; Anirban Maitra; Manuel Hidalgo Journal: Clin Cancer Res Date: 2006-08-01 Impact factor: 12.531
Authors: Konrad Klinghammer; Jan-Dirk Raguse; Thomas Plath; Andreas E Albers; Korinna Joehrens; Andre Zakarneh; Bernadette Brzezicha; Annika Wulf-Goldenberg; Ulrich Keilholz; Jens Hoffmann; Iduna Fichtner Journal: Int J Cancer Date: 2014-11-26 Impact factor: 7.396
Authors: Ignacio Garrido-Laguna; Maria Uson; N V Rajeshkumar; Aik Choon Tan; Elizabeth de Oliveira; Collins Karikari; Maria C Villaroel; Ana Salomon; Gretchen Taylor; Rajni Sharma; Ralph H Hruban; Anirban Maitra; Daniel Laheru; Belén Rubio-Viqueira; Antonio Jimeno; Manuel Hidalgo Journal: Clin Cancer Res Date: 2011-07-08 Impact factor: 12.531
Authors: Antonio Jimeno; Georg Feldmann; Ana Suárez-Gauthier; Zeshaan Rasheed; Anna Solomon; Gang-Ming Zou; Belen Rubio-Viqueira; Elena García-García; Fernando López-Ríos; William Matsui; Anirban Maitra; Manuel Hidalgo Journal: Mol Cancer Ther Date: 2009-01-27 Impact factor: 6.261
Authors: Vivian W Y Lui; Matthew L Hedberg; Hua Li; Bhavana S Vangara; Kelsey Pendleton; Yan Zeng; Yiling Lu; Qiuhong Zhang; Yu Du; Breean R Gilbert; Maria Freilino; Sam Sauerwein; Noah D Peyser; Dong Xiao; Brenda Diergaarde; Lin Wang; Simion Chiosea; Raja Seethala; Jonas T Johnson; Seungwon Kim; Umamaheswar Duvvuri; Robert L Ferris; Marjorie Romkes; Tomoko Nukui; Patrick Kwok-Shing Ng; Levi A Garraway; Peter S Hammerman; Gordon B Mills; Jennifer R Grandis Journal: Cancer Discov Date: 2013-04-25 Impact factor: 39.397
Authors: Ranee Mehra; Fang Zhu; Dong-Hua Yang; Kathy Q Cai; Joellen Weaver; Mahendra K Singh; Anna S Nikonova; Erica A Golemis; Douglas B Flieder; Harry S Cooper; Miriam Lango; John A Ridge; Barbara Burtness Journal: Clin Cancer Res Date: 2013-10-02 Impact factor: 12.531
Authors: Andrew P Stein; Adam D Swick; Molly A Smith; Grace C Blitzer; Robert Z Yang; Sandeep Saha; Paul M Harari; Paul F Lambert; Cheng Z Liu; Randall J Kimple Journal: Cancer Med Date: 2015-01-26 Impact factor: 4.452
Authors: Shaohua Peng; Chad J Creighton; Yiqun Zhang; Banibrata Sen; Tuhina Mazumdar; Jeffery N Myers; Stephen Y Lai; Adrian Woolfson; Matthew V Lorenzi; Diana Bell; Michelle D Williams; Faye M Johnson Journal: J Transl Med Date: 2013-08-27 Impact factor: 5.531
Authors: Adam D Swick; Prashanth J Prabakaran; Margot C Miller; Amal M Javaid; Michael M Fisher; Emmanuel Sampene; Irene M Ong; Rong Hu; Mari Iida; Kwangok P Nickel; Justine Y Bruce; Deric L Wheeler; Randall J Kimple Journal: Mol Cancer Ther Date: 2017-04-26 Impact factor: 6.261
Authors: Prashanth J Prabakaran; Amal M Javaid; Adam D Swick; Lauryn R Werner; Kwangok P Nickel; Emmanuel Sampene; Rong Hu; Irene M Ong; Justine Y Bruce; Gregory K Hartig; Aaron M Wieland; Jude Canon; Paul M Harari; Randall J Kimple Journal: Clin Cancer Res Date: 2017-06-28 Impact factor: 12.531
Authors: Giacomo Miserocchi; Chiara Spadazzi; Sebastiano Calpona; Francesco De Rosa; Alice Usai; Alessandro De Vita; Chiara Liverani; Claudia Cocchi; Silvia Vanni; Chiara Calabrese; Massimo Bassi; Giovanni De Luca; Giuseppe Meccariello; Toni Ibrahim; Marco Schiavone; Laura Mercatali Journal: J Pers Med Date: 2022-05-24
Authors: Michael M Fisher; Gopika SenthilKumar; Rong Hu; Steve Goldstein; Irene M Ong; Margot C Miller; Sean R Brennan; Saakshi Kaushik; Lindsey Abel; Kwangok P Nickel; Gopal Iyer; Paul M Harari; Randall J Kimple; Andrew M Baschnagel Journal: Int J Radiat Oncol Biol Phys Date: 2020-04-13 Impact factor: 7.038
Authors: Tet Woo Lee; Amy Lai; Julia K Harms; Dean C Singleton; Benjamin D Dickson; Andrew M J Macann; Michael P Hay; Stephen M F Jamieson Journal: Cancers (Basel) Date: 2020-12-12 Impact factor: 6.639
Authors: Andrew M Baschnagel; Saakshi Kaushik; Arda Durmaz; Steve Goldstein; Irene M Ong; Lindsey Abel; Paul A Clark; Zafer Gurel; Ticiana Leal; Darya Buehler; Gopal Iyer; Jacob G Scott; Randall J Kimple Journal: Sci Rep Date: 2021-01-28 Impact factor: 4.379
Authors: Lindsey Abel; Arda Durmaz; Rong Hu; Colin Longhurst; Andrew M Baschnagel; Deric Wheeler; Jacob G Scott; Randall J Kimple Journal: J Transl Med Date: 2021-04-28 Impact factor: 8.440