Literature DB >> 28018724

GPU accelerated real-time confocal fluorescence lifetime imaging microscopy (FLIM) based on the analog mean-delay (AMD) method.

Byungyeon Kim1, Byungjun Park1, Seungrag Lee2, Youngjae Won2.   

Abstract

We demonstrated GPU accelerated real-time confocal fluorescence lifetime imaging microscopy (FLIM) based on the analog mean-delay (AMD) method. Our algorithm was verified for various fluorescence lifetimes and photon numbers. The GPU processing time was faster than the physical scanning time for images up to 800 × 800, and more than 149 times faster than a single core CPU. The frame rate of our system was demonstrated to be 13 fps for a 200 × 200 pixel image when observing maize vascular tissue. This system can be utilized for observing dynamic biological reactions, medical diagnosis, and real-time industrial inspection.

Entities:  

Keywords:  (120.0120) Instrumentation, measurement, and metrology; (170.0170) Medical optics and biotechnology

Year:  2016        PMID: 28018724      PMCID: PMC5175551          DOI: 10.1364/BOE.7.005055

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  12 in total

1.  Fluorescence lifetime imaging by time-correlated single-photon counting.

Authors:  W Becker; A Bergmann; M A Hink; K König; K Benndorf; C Biskup
Journal:  Microsc Res Tech       Date:  2004-01-01       Impact factor: 2.769

2.  Referencing techniques for the analog mean-delay method in fluorescence lifetime imaging.

Authors:  Young Jae Won; Sucbei Moon; Won-Taek Han; Dug Young Kim
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2010-11-01       Impact factor: 2.129

Review 3.  Imaging protein molecules using FRET and FLIM microscopy.

Authors:  Horst Wallrabe; Ammasi Periasamy
Journal:  Curr Opin Biotechnol       Date:  2005-02       Impact factor: 9.740

4.  Analog mean-delay method for high-speed fluorescence lifetime measurement.

Authors:  Sucbei Moon; Youngjae Won; Dug Young Kim
Journal:  Opt Express       Date:  2009-02-16       Impact factor: 3.894

5.  Multiphoton fluorescence lifetime imaging of intrinsic fluorescence in human and rat brain tissue reveals spatially distinct NADH binding.

Authors:  Thomas H Chia; Anne Williamson; Dennis D Spencer; Michael J Levene
Journal:  Opt Express       Date:  2008-03-17       Impact factor: 3.894

6.  High-speed confocal fluorescence lifetime imaging microscopy (FLIM) with the analog mean delay (AMD) method.

Authors:  Youngjae Won; Sucbei Moon; Wenzhong Yang; Donguk Kim; Won-Taek Han; Dug Young Kim
Journal:  Opt Express       Date:  2011-02-14       Impact factor: 3.894

7.  Real-time acquisition and display of flow contrast using speckle variance optical coherence tomography in a graphics processing unit.

Authors:  Jing Xu; Kevin Wong; Yifan Jian; Marinko V Sarunic
Journal:  J Biomed Opt       Date:  2014-02       Impact factor: 3.170

8.  Precision and accuracy of the analog mean-delay method for high-speed fluorescence lifetime measurement.

Authors:  Young Jae Won; Won-Taek Han; Dug Young Kim
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2011-10-01       Impact factor: 2.129

9.  Wide-field fluorescence lifetime imaging of cancer.

Authors:  James McGinty; Neil P Galletly; Chris Dunsby; Ian Munro; Daniel S Elson; Jose Requejo-Isidro; Patrizia Cohen; Raida Ahmad; Amanda Forsyth; Andrew V Thillainayagam; Mark A A Neil; Paul M W French; Gordon W Stamp
Journal:  Biomed Opt Express       Date:  2010-08-19       Impact factor: 3.732

10.  FRET imaging of hemoglobin concentration in Plasmodium falciparum-infected red cells.

Authors:  Alessandro Esposito; Teresa Tiffert; Jakob M A Mauritz; Simon Schlachter; Lawrence H Bannister; Clemens F Kaminski; Virgilio L Lew
Journal:  PLoS One       Date:  2008-11-21       Impact factor: 3.240

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  4 in total

1.  Real-time visualization of two-photon fluorescence lifetime imaging microscopy using a wavelength-tunable femtosecond pulsed laser.

Authors:  Jiheun Ryu; Ungyo Kang; Jayul Kim; Hyunjun Kim; Jue Hyung Kang; Hyunjin Kim; Dae Kyung Sohn; Jae-Heon Jeong; Hongki Yoo; Bomi Gweon
Journal:  Biomed Opt Express       Date:  2018-06-28       Impact factor: 3.732

2.  Single-photon peak event detection (SPEED): a computational method for fast photon counting in fluorescence lifetime imaging microscopy.

Authors:  Janet E Sorrells; Rishyashring R Iyer; Lingxiao Yang; Eric J Chaney; Marina Marjanovic; Haohua Tu; Stephen A Boppart
Journal:  Opt Express       Date:  2021-11-08       Impact factor: 3.894

3.  Real-time pixelwise phasor analysis for video-rate two-photon fluorescence lifetime imaging microscopy.

Authors:  Janet E Sorrells; Rishyashring R Iyer; Lingxiao Yang; Andrew J Bower; Darold R Spillman; Eric J Chaney; Haohua Tu; Stephen A Boppart
Journal:  Biomed Opt Express       Date:  2021-06-11       Impact factor: 3.562

Review 4.  High-throughput, multi-parametric, and correlative fluorescence lifetime imaging.

Authors:  Chetan Poudel; Ioanna Mela; Clemens F Kaminski
Journal:  Methods Appl Fluoresc       Date:  2020-02-20       Impact factor: 3.009

  4 in total

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