Literature DB >> 28011601

CSDB_GT: a new curated database on glycosyltransferases.

Ksenia S Egorova1, Philip V Toukach1.   

Abstract

Glycosyltransferases (GTs) are carbohydrate-active enzymes (CAZy) involved in the synthesis of natural glycan structures. The application of CAZy is highly demanded in biotechnology and pharmaceutics. However, it is being hindered by the lack of high-quality and comprehensive repositories of the research data accumulated so far. In this paper, we describe a new curated Carbohydrate Structure Glycosyltransferase Database (CSDB_GT). Currently, CSDB_GT provides ca. 780 activities exhibited by GTs, as well as several other CAZy, found in Arabidopsis thaliana and described in ca. 180 publications. It covers most published data on A. thaliana GTs with evidenced functions. CSDB_GT is linked to the Carbohydrate Structure Database (CSDB), which stores data on archaeal, bacterial, fungal and plant glycans. The CSDB_GT data are supported by experimental evidences and can be traced to original publications. CSDB_GT is freely available at http://csdb.glycoscience.ru/gt.html.
© The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Arabidopsis thaliana; CAZy; CSDB; database; glycosyltransferase

Year:  2016        PMID: 28011601     DOI: 10.1093/glycob/cww137

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  4 in total

1.  GTDB: an integrated resource for glycosyltransferase sequences and annotations.

Authors:  Chenfen Zhou; Qingwei Xu; Sheng He; Wei Ye; Ruifang Cao; Pengyu Wang; Yunchao Ling; Xing Yan; Qingzhong Wang; Guoqing Zhang
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

2.  Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans.

Authors:  Philip V Toukach; Ksenia S Egorova
Journal:  Sci Data       Date:  2022-03-30       Impact factor: 6.444

Review 3.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

Review 4.  Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics.

Authors:  Xing Li; Zhijue Xu; Xiaokun Hong; Yan Zhang; Xia Zou
Journal:  Int J Mol Sci       Date:  2020-09-14       Impact factor: 5.923

  4 in total

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