Literature DB >> 27995788

Glycan OH Exchange Rate Determination in Aqueous Solution: Seeking Evidence for Transient Hydrogen Bonds.

Marcos D Battistel1, Hugo F Azurmendi1, Darón I Freedberg1.   

Abstract

Hydrogen bonds (Hbonds) are important stabilizing forces in biomolecules. However, for glycans in aqueous solution, direct NMR detection of Hbonds is elusive because of their transient nature. Here, we present Isotope-based Natural-abundance TOtal correlation eXchange SpectroscopY (INTOXSY), a new 1H-13C heteronuclear single quantum coherence-total correlation spectroscopy based method, to extract OH groups' exchange rate constants (kex) for molecules in natural 13C abundance and show that OH Hbonds can be inferred from "slower" H/D kex. We evaluate kex measured with INTOXSY in light of those extracted with line-shape analysis. Subsequently, we use a set of common glycans to establish a kex reference basis set and to infer the existence of transient Hbonds involving OH donor groups. Then, we report kex values for a series of mono- and disaccharides, as well as for oligosaccharides sialyl Lewis X and β-cyclodextrin, and compare the results with those from the reference set to extract Hbond information. Finally, we utilize NMR experimental data in conjunction with molecular dynamics simulations to establish donor and acceptor Hbond pairs. Our exchange rate measurements indicate that OH/OD exchange rates, kHD, values <10 s-1 are consistent with transient Hbond OH groups and potential acceptor groups can be uncovered through MD simulations.

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Year:  2017        PMID: 27995788     DOI: 10.1021/acs.jpcb.6b10594

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Conformational properties of l-fucose and the tetrasaccharide building block of the sulfated l-fucan from Lytechinus variegatus.

Authors:  Francisco F Bezerra; William P Vignovich; AyoOluwa O Aderibigbe; Hao Liu; Joshua S Sharp; Robert J Doerksen; Vitor H Pomin
Journal:  J Struct Biol       Date:  2019-11-04       Impact factor: 2.867

2.  The β-reducing end in α(2-8)-polysialic acid constitutes a unique structural motif.

Authors:  Hugo F Azurmendi; Marcos D Battistel; Jasmin Zarb; Flora Lichaa; Alejandro Negrete Virgen; Joseph Shiloach; Darón I Freedberg
Journal:  Glycobiology       Date:  2017-09-01       Impact factor: 4.313

3.  The Incorporation of Labile Protons into Multidimensional NMR Analyses: Glycan Structures Revisited.

Authors:  Mihajlo Novakovic; Marcos D Battistel; Hugo F Azurmendi; Maria-Grazia Concilio; Darón I Freedberg; Lucio Frydman
Journal:  J Am Chem Soc       Date:  2021-06-04       Impact factor: 15.419

Review 4.  Biophysical Analyses for Probing Glycan-Protein Interactions.

Authors:  Masamichi Nagae; Yoshiki Yamaguchi
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

  4 in total

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