Literature DB >> 27992720

From Cooperative Self-Assembly to Water-Soluble Supramolecular Polymers Using Coarse-Grained Simulations.

Davide Bochicchio1, Giovanni M Pavan1.   

Abstract

Supramolecular polymers, formed via noncovalent self-assembly of elementary monomers, are extremely interesting for their dynamic bioinspired properties. In order to understand their behavior, it is necessary to access their dynamics while maintaining high resolution in the treatment of the monomer structure and monomer-monomer interactions, which is typically a difficult task, especially in aqueous solution. Focusing on 1,3,5-benzenetricarboxamide (BTA) water-soluble supramolecular polymers, we have developed a transferable coarse-grained model that allows studying BTA supramolecular polymerization in water, while preserving remarkable consistency with the atomistic models in the description of the key interactions between the monomers (hydrophobic, H-bonding, etc.), self-assembly cooperativity, and amplification of order into the growing fibers. This permitted us to monitor the amplification of the key interactions between the monomers (including H-bonding) in the BTA fibers during the dynamic polymerization process. Our molecular dynamics simulations provide a picture of a stepwise cooperative polymerization mechanism, where initial fast hydrophobic aggregation of the BTA monomers in water is followed by the slower reorganization of these disordered aggregates into ordered directional oligomers. Supramolecular polymer growth then proceeds on a slower time scale. We challenged our models via comparison with the experimental evidence, capturing the effect of temperature variations and subtle changes in the monomer structure on the polymerization and on the properties of the fibers seen in the real systems. This work provides a multiscale spatiotemporal characterization of BTA self-assembly in water and a useful platform to study a variety of BTA-based supramolecular polymers toward structure-property relationships.

Entities:  

Keywords:  1,3,5-benzenetricarboxamide; BTA; MARTINI force-field; coarse-grained simulation; cooperative polymerization; order amplification; self-assembly; supramolecular polymer

Year:  2017        PMID: 27992720     DOI: 10.1021/acsnano.6b07628

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  14 in total

1.  Solvent-driven chirality for luminescent self-assembled structures: experiments and theory.

Authors:  Charles Lochenie; Alberto Insuasty; Tommaso Battisti; Luca Pesce; Andrea Gardin; Claudio Perego; Mike Dentinger; Di Wang; Giovanni M Pavan; Alessandro Aliprandi; Luisa De Cola
Journal:  Nanoscale       Date:  2020-10-29       Impact factor: 7.790

2.  Into the Dynamics of a Supramolecular Polymer at Submolecular Resolution.

Authors:  Davide Bochicchio; Matteo Salvalaglio; Giovanni M Pavan
Journal:  Nat Commun       Date:  2017-07-27       Impact factor: 14.919

Review 3.  Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments.

Authors:  Pim W J M Frederix; Ilias Patmanidis; Siewert J Marrink
Journal:  Chem Soc Rev       Date:  2018-05-21       Impact factor: 54.564

4.  Consequences of a cosolvent on the structure and molecular dynamics of supramolecular polymers in water.

Authors:  René P M Lafleur; Xianwen Lou; Giovanni M Pavan; Anja R A Palmans; E W Meijer
Journal:  Chem Sci       Date:  2018-06-11       Impact factor: 9.825

5.  How the Choice of Force-Field Affects the Stability and Self-Assembly Process of Supramolecular CTA Fibers.

Authors:  Tomasz K Piskorz; A H de Vries; Jan H van Esch
Journal:  J Chem Theory Comput       Date:  2021-11-23       Impact factor: 6.006

6.  Controlling the length of porphyrin supramolecular polymers via coupled equilibria and dilution-induced supramolecular polymerization.

Authors:  Elisabeth Weyandt; Luigi Leanza; Riccardo Capelli; Giovanni M Pavan; Ghislaine Vantomme; E W Meijer
Journal:  Nat Commun       Date:  2022-01-11       Impact factor: 17.694

7.  Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles.

Authors:  Pim W J M Frederix; Julien Idé; Yigit Altay; Gaël Schaeffer; Mathieu Surin; David Beljonne; Anna S Bondarenko; Thomas L C Jansen; Sijbren Otto; Siewert J Marrink
Journal:  ACS Nano       Date:  2017-07-21       Impact factor: 15.881

8.  Pitfalls of the Martini Model.

Authors:  Riccardo Alessandri; Paulo C T Souza; Sebastian Thallmair; Manuel N Melo; Alex H de Vries; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2019-09-24       Impact factor: 6.006

9.  Exploring the Potential of Benzene-1,3,5-tricarboxamide Supramolecular Polymers as Biomaterials.

Authors:  Silvia Varela-Aramburu; Giulia Morgese; Lu Su; Sandra M C Schoenmakers; Mattia Perrone; Luigi Leanza; Claudio Perego; Giovanni M Pavan; Anja R A Palmans; E W Meijer
Journal:  Biomacromolecules       Date:  2020-09-29       Impact factor: 6.988

10.  Cyclic Photoisomerization of Azobenzene in Atomistic Simulations: Modeling the Effect of Light on Columnar Aggregates of Azo Stars.

Authors:  Markus Koch; Marina Saphiannikova; Olga Guskova
Journal:  Molecules       Date:  2021-12-18       Impact factor: 4.411

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