Literature DB >> 27989554

Hypertranscription in Development, Stem Cells, and Regeneration.

Michelle Percharde1, Aydan Bulut-Karslioglu1, Miguel Ramalho-Santos2.   

Abstract

Cells can globally upregulate their transcriptome during specific transitions, a phenomenon called hypertranscription. Evidence for hypertranscription dates back over 70 years but has gone largely ignored in the genomics era until recently. We discuss data supporting the notion that hypertranscription is a unifying theme in embryonic development, stem cell biology, regeneration, and cell competition. We review the history, methods for analysis, underlying mechanisms, and biological significance of hypertranscription.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chd1; Myc; cell competition; cell number normalization; development; hypertranscription; open chromatin; proliferation; regeneration; self-renewal; stem cells

Mesh：

Year:  2016        PMID： 27989554      PMCID： PMC5225143          DOI： 10.1016/j.devcel.2016.11.010

Source DB:  PubMed          Journal:  Dev Cell        ISSN： 1534-5807            Impact factor:   12.270


  136 in total

1.  Nuclei from normal and leukemic mouse spleen. II. The nucleic acid content of normal and leukemic nuclei.

Authors:  M L PETERMANN; R M SCHNEIDER
Journal:  Cancer Res       Date:  1951-07       Impact factor: 12.701

2.  Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells.

Authors:  Ehsan Habibi; Arie B Brinkman; Julia Arand; Leonie I Kroeze; Hindrik H D Kerstens; Filomena Matarese; Konstantin Lepikhov; Marta Gut; Isabelle Brun-Heath; Nina C Hubner; Rosaria Benedetti; Lucia Altucci; Joop H Jansen; Jörn Walter; Ivo G Gut; Hendrik Marks; Hendrik G Stunnenberg
Journal:  Cell Stem Cell       Date:  2013-07-11       Impact factor: 24.633

3.  A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Authors:  Marc Sultan; Marcel H Schulz; Hugues Richard; Alon Magen; Andreas Klingenhoff; Matthias Scherf; Martin Seifert; Tatjana Borodina; Aleksey Soldatov; Dmitri Parkhomchuk; Dominic Schmidt; Sean O'Keeffe; Stefan Haas; Martin Vingron; Hans Lehrach; Marie-Laure Yaspo
Journal:  Science       Date:  2008-07-03       Impact factor: 47.728

4.  A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation.

Authors:  Prabha Sampath; David K Pritchard; Lil Pabon; Hans Reinecke; Stephen M Schwartz; David R Morris; Charles E Murry
Journal:  Cell Stem Cell       Date:  2008-05-08       Impact factor: 24.633

5.  Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast.

Authors:  Marcela Guzman-Ayala; Michael Sachs; Fong Ming Koh; Courtney Onodera; Aydan Bulut-Karslioglu; Chih-Jen Lin; Priscilla Wong; Rachel Nitta; Jun S Song; Miguel Ramalho-Santos
Journal:  Development       Date:  2014-12-05       Impact factor: 6.868

6.  YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers.

Authors:  Giorgio G Galli; Matteo Carrara; Wei-Chien Yuan; Christian Valdes-Quezada; Basanta Gurung; Brian Pepe-Mooney; Tinghu Zhang; Geert Geeven; Nathanael S Gray; Wouter de Laat; Raffaele A Calogero; Fernando D Camargo
Journal:  Mol Cell       Date:  2015-10-01       Impact factor: 17.970

7.  A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage.

Authors:  J Newport; M Kirschner
Journal:  Cell       Date:  1982-10       Impact factor: 41.582

Review 8.  Taming of the beast: shaping Myc-dependent amplification.

Authors:  Elmar Wolf; Charles Y Lin; Martin Eilers; David L Levens
Journal:  Trends Cell Biol       Date:  2014-12-01       Impact factor: 20.808

9.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

10.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962
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  24 in total

Review 1.  Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture.

Authors:  Iain A Sawyer; Miroslav Dundr
Journal:  Chromosoma       Date:  2017-06-07       Impact factor: 4.316

2.  Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells.

Authors:  Xudong Fu; Xiaoji Wu; Mohamed Nadhir Djekidel; Yi Zhang
Journal:  Nat Cell Biol       Date:  2019-06-17       Impact factor: 28.824

3.  Global Hypertranscription in the Mouse Embryonic Germline.

Authors:  Michelle Percharde; Priscilla Wong; Miguel Ramalho-Santos
Journal:  Cell Rep       Date:  2017-06-06       Impact factor: 9.423

4.  The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number.

Authors:  Alfonso Lavado; Jun Young Park; Joshua Paré; David Finkelstein; Haitao Pan; Beisi Xu; Yiping Fan; Ram Parikshan Kumar; Geoffrey Neale; Young Don Kwak; Peter J McKinnon; Randy L Johnson; Xinwei Cao
Journal:  Dev Cell       Date:  2018-10-25       Impact factor: 12.270

5.  Inhibition of Karyopherin β1-Mediated Nuclear Import Disrupts Oncogenic Lineage-Defining Transcription Factor Activity in Small Cell Lung Cancer.

Authors:  Demetra P Kelenis; Kathia E Rodarte; Rahul K Kollipara; Karine Pozo; Shreoshi Pal Choudhuri; Kyle B Spainhower; Sarah J Wait; Victor Stastny; Trudy G Oliver; Jane E Johnson
Journal:  Cancer Res       Date:  2022-09-02       Impact factor: 13.312

Review 6.  Regulation, functions and transmission of bivalent chromatin during mammalian development.

Authors:  Trisha A Macrae; Julie Fothergill-Robinson; Miguel Ramalho-Santos
Journal:  Nat Rev Mol Cell Biol       Date:  2022-08-26       Impact factor: 113.915

7.  A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.

Authors:  Michelle Percharde; Chih-Jen Lin; Yafei Yin; Juan Guan; Gabriel A Peixoto; Aydan Bulut-Karslioglu; Steffen Biechele; Bo Huang; Xiaohua Shen; Miguel Ramalho-Santos
Journal:  Cell       Date:  2018-06-21       Impact factor: 41.582

8.  The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output.

Authors:  Aydan Bulut-Karslioglu; Trisha A Macrae; Juan A Oses-Prieto; Sergio Covarrubias; Michelle Percharde; Gregory Ku; Aaron Diaz; Michael T McManus; Alma L Burlingame; Miguel Ramalho-Santos
Journal:  Cell Stem Cell       Date:  2018-03-01       Impact factor: 24.633

9.  A global chromatin compaction pathway that represses germline gene expression during starvation.

Authors:  Mezmur D Belew; Emilie Chien; Matthew Wong; W Matthew Michael
Journal:  J Cell Biol       Date:  2021-06-15       Impact factor: 10.539

10.  Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass.

Authors:  Maud Borensztein; Ikuhiro Okamoto; Laurène Syx; Guillaume Guilbaud; Christel Picard; Katia Ancelin; Rafael Galupa; Patricia Diabangouaya; Nicolas Servant; Emmanuel Barillot; Azim Surani; Mitinori Saitou; Chong-Jian Chen; Konstantinos Anastassiadis; Edith Heard
Journal:  Nat Commun       Date:  2017-11-03       Impact factor: 14.919
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