| Literature DB >> 27980838 |
Eunjin Kwon1, Ki-Min Park1, Hyunjin Park1, Tae Ho Kim1.
Abstract
The title compound, C7H13N3O3S [systematic name: (Z)-methyl 2-di-methyl-amino-N-(methyl-carbamo-yloxy)-2-oxoethanimido-thio-ate], is an oxime carbamate acaride, insecticide and nematicide. The asymmetric unit comprises two independent mol-ecules, A and B. The dihedral angles between the mean planes [r.m.s. deviations = 0.0017 (A) and 0.0016 Å (B)] of the acetamide and oxyimino groups are 88.80 (8)° for A and 87.05 (8)° for B. In the crystal, N/C-H⋯O hydrogen bonds link adjacent mol-ecules, forming chains along the a axis. The chains are further linked by C-H⋯O hydrogen bonds, resulting in a three-dimensional network with alternating rows of A and B mol-ecules in the bc plane stacked along the a-axis direction. The structure was refined as an inversion twin with a final BASF parameter of 0.16 (9).Entities:
Keywords: acaricide; crystal structure; insecticide; nematicide; oxamyl
Year: 2016 PMID: 27980838 PMCID: PMC5137616 DOI: 10.1107/S2056989016018168
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.13 | 2.871 (3) | 142 |
| N4—H4 | 0.88 | 2.04 | 2.794 (3) | 142 |
| C4—H4 | 0.98 | 2.54 | 3.075 (4) | 114 |
| C6—H6 | 0.98 | 2.60 | 3.518 (4) | 156 |
| C7—H7 | 0.98 | 2.52 | 3.431 (4) | 155 |
| C11—H11 | 0.98 | 2.53 | 3.042 (4) | 113 |
| C13—H13 | 0.98 | 2.53 | 3.440 (4) | 155 |
| C14—H14 | 0.98 | 2.59 | 3.554 (4) | 168 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2The double chains formed through intermolecular N—H⋯O (black dashed lines) and C—H⋯O (sky-blue dashed lines) hydrogen bonds. The A and B molecules are shown in green and yellow, respectively. H atoms not involved in intermolecular interactions have been omitted for clarity.
Figure 3The three-dimensional network made up of molecules A (green) and B (yellow). Black dashed lines represent intermolecular N—H⋯O hydrogen bonds. The C—H⋯O hydrogen bonds are shown as sky-blue (between each molecule A or B) and red (between molecules A and B) dashed lines, respectively. H atoms not involved in intermolecular interactions have been omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | C7H13N3O3S |
|
| 219.26 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 173 |
|
| 8.3367 (4), 10.7752 (5), 24.1016 (12) |
|
| 2165.04 (18) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.29 |
| Crystal size (mm) | 0.50 × 0.14 × 0.11 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.665, 0.746 |
| No. of measured, independent and observed [ | 19300, 5238, 4655 |
|
| 0.035 |
| (sin θ/λ)max (Å−1) | 0.667 |
| Refinement | |
|
| 0.037, 0.090, 1.04 |
| No. of reflections | 5238 |
| No. of parameters | 262 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.21, −0.23 |
| Absolute structure | Refined as an inversion twin |
| Absolute structure parameter | 0.16 (9) |
Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2010 ▸) and publCIF (Westrip, 2010 ▸).
| C7H13N3O3S | |
| Mo | |
| Orthorhombic, | Cell parameters from 6335 reflections |
| θ = 2.5–27.8° | |
| µ = 0.29 mm−1 | |
| Plate, colourless | |
| 0.50 × 0.14 × 0.11 mm | |
| Bruker APEXII CCD diffractometer | 4655 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | θmax = 28.3°, θmin = 1.7° |
| 19300 measured reflections | |
| 5238 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.21 e Å−3 | |
| 5238 reflections | Δρmin = −0.23 e Å−3 |
| 262 parameters | Absolute structure: Refined as an inversion twin |
| 1 restraint | Absolute structure parameter: 0.16 (9) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component inversion twin. |
| S1 | 0.55678 (10) | 0.32807 (7) | 0.87717 (3) | 0.0373 (2) | |
| S2 | 0.97239 (10) | 0.16264 (7) | 0.54545 (3) | 0.0376 (2) | |
| O1 | 0.8636 (3) | 0.13823 (18) | 0.74085 (9) | 0.0308 (5) | |
| O2 | 0.6589 (2) | 0.17413 (17) | 0.79576 (8) | 0.0270 (4) | |
| O3 | 0.2966 (3) | 0.0966 (2) | 0.91570 (10) | 0.0431 (6) | |
| O4 | 1.2851 (3) | 0.36802 (18) | 0.67471 (9) | 0.0307 (5) | |
| O5 | 1.0771 (3) | 0.32628 (17) | 0.62210 (9) | 0.0282 (5) | |
| O6 | 0.7167 (3) | 0.3997 (2) | 0.50123 (10) | 0.0403 (6) | |
| N1 | 0.6479 (3) | 0.0112 (2) | 0.73350 (10) | 0.0290 (5) | |
| H1N | 0.5497 | −0.0037 | 0.7451 | 0.035* | |
| N2 | 0.5009 (3) | 0.1328 (2) | 0.81132 (10) | 0.0272 (5) | |
| N3 | 0.1571 (3) | 0.2143 (2) | 0.85463 (10) | 0.0303 (6) | |
| N4 | 1.0729 (3) | 0.4993 (2) | 0.67852 (10) | 0.0287 (5) | |
| H4N | 0.9764 | 0.5151 | 0.6655 | 0.034* | |
| N5 | 0.9217 (3) | 0.3683 (2) | 0.60490 (10) | 0.0261 (5) | |
| N6 | 0.5764 (3) | 0.2808 (2) | 0.56227 (10) | 0.0291 (6) | |
| C1 | 0.7188 (4) | −0.0672 (3) | 0.69115 (14) | 0.0348 (7) | |
| H1A | 0.7844 | −0.0164 | 0.6662 | 0.052* | |
| H1B | 0.6335 | −0.1079 | 0.6699 | 0.052* | |
| H1C | 0.7863 | −0.1304 | 0.7088 | 0.052* | |
| C2 | 0.7298 (4) | 0.1050 (2) | 0.75477 (12) | 0.0244 (6) | |
| C3 | 0.4493 (4) | 0.2044 (3) | 0.84969 (11) | 0.0242 (6) | |
| C4 | 0.4197 (5) | 0.3917 (4) | 0.92805 (16) | 0.0481 (10) | |
| H4A | 0.3255 | 0.4260 | 0.9091 | 0.072* | |
| H4B | 0.4736 | 0.4576 | 0.9490 | 0.072* | |
| H4C | 0.3858 | 0.3259 | 0.9536 | 0.072* | |
| C5 | 0.2909 (3) | 0.1659 (3) | 0.87589 (13) | 0.0271 (6) | |
| C6 | 0.0028 (4) | 0.1835 (4) | 0.88024 (16) | 0.0398 (8) | |
| H6A | 0.0171 | 0.1138 | 0.9059 | 0.060* | |
| H6B | −0.0742 | 0.1604 | 0.8513 | 0.060* | |
| H6C | −0.0376 | 0.2557 | 0.9007 | 0.060* | |
| C7 | 0.1526 (4) | 0.3046 (3) | 0.80973 (14) | 0.0372 (7) | |
| H7A | 0.1188 | 0.3853 | 0.8243 | 0.056* | |
| H7B | 0.0764 | 0.2770 | 0.7813 | 0.056* | |
| H7C | 0.2597 | 0.3122 | 0.7933 | 0.056* | |
| C8 | 1.1426 (4) | 0.5816 (3) | 0.71943 (13) | 0.0348 (7) | |
| H8A | 1.1834 | 0.5326 | 0.7507 | 0.052* | |
| H8B | 1.0607 | 0.6396 | 0.7327 | 0.052* | |
| H8C | 1.2311 | 0.6281 | 0.7026 | 0.052* | |
| C9 | 1.1516 (4) | 0.4014 (2) | 0.66055 (11) | 0.0242 (6) | |
| C10 | 0.8681 (4) | 0.2936 (2) | 0.56845 (11) | 0.0240 (6) | |
| C11 | 0.8379 (5) | 0.0982 (3) | 0.49430 (15) | 0.0462 (9) | |
| H11A | 0.7431 | 0.0641 | 0.5129 | 0.069* | |
| H11B | 0.8928 | 0.0320 | 0.4739 | 0.069* | |
| H11C | 0.8049 | 0.1635 | 0.4684 | 0.069* | |
| C12 | 0.7109 (4) | 0.3295 (2) | 0.54159 (13) | 0.0267 (6) | |
| C13 | 0.5720 (4) | 0.1938 (3) | 0.60790 (14) | 0.0366 (7) | |
| H13A | 0.5364 | 0.1126 | 0.5944 | 0.055* | |
| H13B | 0.4972 | 0.2238 | 0.6363 | 0.055* | |
| H13C | 0.6795 | 0.1861 | 0.6240 | 0.055* | |
| C14 | 0.4231 (4) | 0.3106 (4) | 0.53622 (15) | 0.0420 (8) | |
| H14A | 0.4301 | 0.3922 | 0.5184 | 0.063* | |
| H14B | 0.3386 | 0.3120 | 0.5645 | 0.063* | |
| H14C | 0.3976 | 0.2476 | 0.5083 | 0.063* |
| S1 | 0.0356 (4) | 0.0368 (4) | 0.0393 (4) | −0.0072 (3) | 0.0091 (4) | −0.0137 (4) |
| S2 | 0.0352 (4) | 0.0330 (4) | 0.0447 (5) | 0.0083 (3) | −0.0103 (4) | −0.0155 (4) |
| O1 | 0.0210 (10) | 0.0284 (10) | 0.0428 (12) | −0.0018 (9) | 0.0060 (9) | −0.0027 (9) |
| O2 | 0.0212 (10) | 0.0271 (10) | 0.0325 (11) | −0.0017 (8) | 0.0047 (9) | −0.0055 (8) |
| O3 | 0.0392 (14) | 0.0478 (13) | 0.0423 (13) | 0.0036 (11) | 0.0085 (11) | 0.0196 (11) |
| O4 | 0.0246 (11) | 0.0275 (10) | 0.0401 (12) | −0.0007 (9) | −0.0058 (10) | 0.0029 (9) |
| O5 | 0.0211 (10) | 0.0257 (10) | 0.0379 (12) | 0.0023 (8) | −0.0061 (9) | −0.0072 (9) |
| O6 | 0.0342 (13) | 0.0476 (12) | 0.0393 (12) | 0.0008 (11) | −0.0035 (10) | 0.0185 (11) |
| N1 | 0.0227 (12) | 0.0282 (11) | 0.0360 (13) | −0.0003 (10) | 0.0061 (10) | −0.0077 (10) |
| N2 | 0.0233 (13) | 0.0265 (12) | 0.0318 (13) | −0.0011 (11) | 0.0054 (11) | 0.0001 (10) |
| N3 | 0.0269 (13) | 0.0338 (13) | 0.0303 (13) | −0.0022 (11) | 0.0031 (11) | 0.0026 (10) |
| N4 | 0.0259 (12) | 0.0261 (11) | 0.0343 (12) | 0.0015 (10) | −0.0078 (10) | −0.0065 (10) |
| N5 | 0.0204 (12) | 0.0268 (11) | 0.0310 (13) | 0.0025 (10) | −0.0039 (10) | −0.0028 (10) |
| N6 | 0.0242 (13) | 0.0338 (12) | 0.0293 (13) | −0.0019 (10) | −0.0014 (10) | −0.0019 (10) |
| C1 | 0.0351 (17) | 0.0295 (15) | 0.0398 (17) | 0.0018 (13) | 0.0061 (14) | −0.0103 (12) |
| C2 | 0.0232 (15) | 0.0219 (12) | 0.0281 (14) | 0.0057 (11) | 0.0031 (12) | 0.0023 (11) |
| C3 | 0.0265 (15) | 0.0235 (13) | 0.0225 (13) | 0.0020 (12) | 0.0005 (11) | 0.0021 (11) |
| C4 | 0.047 (2) | 0.052 (2) | 0.045 (2) | 0.0018 (18) | 0.0094 (18) | −0.0225 (17) |
| C5 | 0.0276 (15) | 0.0256 (13) | 0.0282 (14) | −0.0014 (11) | 0.0051 (13) | −0.0014 (12) |
| C6 | 0.0255 (15) | 0.055 (2) | 0.0388 (17) | −0.0041 (15) | 0.0053 (16) | −0.0005 (16) |
| C7 | 0.0364 (18) | 0.0385 (17) | 0.0368 (17) | 0.0014 (14) | −0.0027 (15) | 0.0072 (14) |
| C8 | 0.0439 (19) | 0.0293 (14) | 0.0311 (15) | −0.0019 (14) | −0.0055 (14) | −0.0050 (12) |
| C9 | 0.0236 (14) | 0.0225 (13) | 0.0266 (13) | −0.0036 (11) | −0.0002 (12) | 0.0020 (11) |
| C10 | 0.0262 (15) | 0.0210 (12) | 0.0249 (13) | 0.0001 (12) | 0.0008 (11) | 0.0001 (11) |
| C11 | 0.048 (2) | 0.0461 (19) | 0.045 (2) | 0.0003 (17) | −0.0105 (17) | −0.0213 (16) |
| C12 | 0.0277 (15) | 0.0253 (12) | 0.0271 (14) | 0.0005 (11) | −0.0025 (13) | −0.0024 (12) |
| C13 | 0.0346 (18) | 0.0368 (16) | 0.0383 (18) | −0.0050 (14) | 0.0050 (14) | 0.0040 (14) |
| C14 | 0.0240 (15) | 0.057 (2) | 0.045 (2) | 0.0030 (15) | −0.0041 (15) | 0.0001 (16) |
| S1—C3 | 1.737 (3) | C1—H1A | 0.9800 |
| S1—C4 | 1.811 (3) | C1—H1B | 0.9800 |
| S2—C10 | 1.748 (3) | C1—H1C | 0.9800 |
| S2—C11 | 1.805 (3) | C3—C5 | 1.521 (4) |
| O1—C2 | 1.218 (4) | C4—H4A | 0.9800 |
| O2—C2 | 1.371 (3) | C4—H4B | 0.9800 |
| O2—N2 | 1.440 (3) | C4—H4C | 0.9800 |
| O3—C5 | 1.216 (4) | C6—H6A | 0.9800 |
| O4—C9 | 1.219 (4) | C6—H6B | 0.9800 |
| O5—C9 | 1.378 (3) | C6—H6C | 0.9800 |
| O5—N5 | 1.434 (3) | C7—H7A | 0.9800 |
| O6—C12 | 1.233 (4) | C7—H7B | 0.9800 |
| N1—C2 | 1.323 (4) | C7—H7C | 0.9800 |
| N1—C1 | 1.451 (4) | C8—H8A | 0.9800 |
| N1—H1N | 0.8800 | C8—H8B | 0.9800 |
| N2—C3 | 1.279 (4) | C8—H8C | 0.9800 |
| N3—C5 | 1.334 (4) | C10—C12 | 1.512 (4) |
| N3—C7 | 1.455 (4) | C11—H11A | 0.9800 |
| N3—C6 | 1.464 (4) | C11—H11B | 0.9800 |
| N4—C9 | 1.315 (4) | C11—H11C | 0.9800 |
| N4—C8 | 1.448 (4) | C13—H13A | 0.9800 |
| N4—H4N | 0.8800 | C13—H13B | 0.9800 |
| N5—C10 | 1.272 (4) | C13—H13C | 0.9800 |
| N6—C12 | 1.334 (4) | C14—H14A | 0.9800 |
| N6—C13 | 1.445 (4) | C14—H14B | 0.9800 |
| N6—C14 | 1.460 (4) | C14—H14C | 0.9800 |
| C3—S1—C4 | 102.89 (16) | N3—C6—H6C | 109.5 |
| C10—S2—C11 | 102.61 (16) | H6A—C6—H6C | 109.5 |
| C2—O2—N2 | 114.5 (2) | H6B—C6—H6C | 109.5 |
| C9—O5—N5 | 114.6 (2) | N3—C7—H7A | 109.5 |
| C2—N1—C1 | 120.5 (2) | N3—C7—H7B | 109.5 |
| C2—N1—H1N | 119.8 | H7A—C7—H7B | 109.5 |
| C1—N1—H1N | 119.8 | N3—C7—H7C | 109.5 |
| C3—N2—O2 | 108.1 (2) | H7A—C7—H7C | 109.5 |
| C5—N3—C7 | 124.6 (3) | H7B—C7—H7C | 109.5 |
| C5—N3—C6 | 118.9 (3) | N4—C8—H8A | 109.5 |
| C7—N3—C6 | 116.3 (3) | N4—C8—H8B | 109.5 |
| C9—N4—C8 | 121.0 (3) | H8A—C8—H8B | 109.5 |
| C9—N4—H4N | 119.5 | N4—C8—H8C | 109.5 |
| C8—N4—H4N | 119.5 | H8A—C8—H8C | 109.5 |
| C10—N5—O5 | 108.5 (2) | H8B—C8—H8C | 109.5 |
| C12—N6—C13 | 124.1 (3) | O4—C9—N4 | 126.9 (3) |
| C12—N6—C14 | 119.2 (3) | O4—C9—O5 | 115.2 (2) |
| C13—N6—C14 | 116.6 (3) | N4—C9—O5 | 117.9 (3) |
| N1—C1—H1A | 109.5 | N5—C10—C12 | 116.0 (2) |
| N1—C1—H1B | 109.5 | N5—C10—S2 | 123.7 (2) |
| H1A—C1—H1B | 109.5 | C12—C10—S2 | 120.1 (2) |
| N1—C1—H1C | 109.5 | S2—C11—H11A | 109.5 |
| H1A—C1—H1C | 109.5 | S2—C11—H11B | 109.5 |
| H1B—C1—H1C | 109.5 | H11A—C11—H11B | 109.5 |
| O1—C2—N1 | 126.2 (3) | S2—C11—H11C | 109.5 |
| O1—C2—O2 | 115.7 (2) | H11A—C11—H11C | 109.5 |
| N1—C2—O2 | 118.1 (3) | H11B—C11—H11C | 109.5 |
| N2—C3—C5 | 115.3 (2) | O6—C12—N6 | 124.7 (3) |
| N2—C3—S1 | 124.4 (2) | O6—C12—C10 | 117.4 (3) |
| C5—C3—S1 | 119.9 (2) | N6—C12—C10 | 117.9 (3) |
| S1—C4—H4A | 109.5 | N6—C13—H13A | 109.5 |
| S1—C4—H4B | 109.5 | N6—C13—H13B | 109.5 |
| H4A—C4—H4B | 109.5 | H13A—C13—H13B | 109.5 |
| S1—C4—H4C | 109.5 | N6—C13—H13C | 109.5 |
| H4A—C4—H4C | 109.5 | H13A—C13—H13C | 109.5 |
| H4B—C4—H4C | 109.5 | H13B—C13—H13C | 109.5 |
| O3—C5—N3 | 125.1 (3) | N6—C14—H14A | 109.5 |
| O3—C5—C3 | 117.4 (3) | N6—C14—H14B | 109.5 |
| N3—C5—C3 | 117.4 (3) | H14A—C14—H14B | 109.5 |
| N3—C6—H6A | 109.5 | N6—C14—H14C | 109.5 |
| N3—C6—H6B | 109.5 | H14A—C14—H14C | 109.5 |
| H6A—C6—H6B | 109.5 | H14B—C14—H14C | 109.5 |
| C2—O2—N2—C3 | 179.8 (2) | S1—C3—C5—N3 | 93.6 (3) |
| C9—O5—N5—C10 | 178.1 (2) | C8—N4—C9—O4 | 0.0 (5) |
| C1—N1—C2—O1 | 3.0 (5) | C8—N4—C9—O5 | 179.2 (2) |
| C1—N1—C2—O2 | −178.2 (3) | N5—O5—C9—O4 | −178.6 (2) |
| N2—O2—C2—O1 | 179.9 (2) | N5—O5—C9—N4 | 2.1 (3) |
| N2—O2—C2—N1 | 1.0 (3) | O5—N5—C10—C12 | −174.7 (2) |
| O2—N2—C3—C5 | −173.4 (2) | O5—N5—C10—S2 | 0.4 (3) |
| O2—N2—C3—S1 | −0.5 (3) | C11—S2—C10—N5 | −179.2 (3) |
| C4—S1—C3—N2 | 179.3 (3) | C11—S2—C10—C12 | −4.2 (3) |
| C4—S1—C3—C5 | −8.0 (3) | C13—N6—C12—O6 | 176.8 (3) |
| C7—N3—C5—O3 | 175.0 (3) | C14—N6—C12—O6 | 0.1 (4) |
| C6—N3—C5—O3 | −0.1 (5) | C13—N6—C12—C10 | −1.4 (4) |
| C7—N3—C5—C3 | −2.4 (4) | C14—N6—C12—C10 | −178.1 (3) |
| C6—N3—C5—C3 | −177.5 (3) | N5—C10—C12—O6 | 85.8 (3) |
| N2—C3—C5—O3 | 89.3 (3) | S2—C10—C12—O6 | −89.5 (3) |
| S1—C3—C5—O3 | −84.0 (3) | N5—C10—C12—N6 | −95.9 (3) |
| N2—C3—C5—N3 | −93.1 (3) | S2—C10—C12—N6 | 88.8 (3) |
| H··· | ||||
| N1—H1 | 0.88 | 2.13 | 2.871 (3) | 142 |
| N4—H4 | 0.88 | 2.04 | 2.794 (3) | 142 |
| C4—H4 | 0.98 | 2.54 | 3.075 (4) | 114 |
| C6—H6 | 0.98 | 2.60 | 3.518 (4) | 156 |
| C7—H7 | 0.98 | 2.52 | 3.431 (4) | 155 |
| C11—H11 | 0.98 | 2.53 | 3.042 (4) | 113 |
| C13—H13 | 0.98 | 2.53 | 3.440 (4) | 155 |
| C14—H14 | 0.98 | 2.59 | 3.554 (4) | 168 |