Literature DB >> 27975218

Platforms and Pipelines for Proteomics Data Analysis and Management.

Marius Cosmin Codrea1, Sven Nahnsen2.   

Abstract

Since mass spectrometry was introduced as the core technology for large-scale analysis of the proteome, the speed of data acquisition, dynamic ranges of measurements, and data quality are continuously improving. These improvements are triggered by regular launches of new methodologies and instruments.

Keywords:  Bioinformatics; Data processing pipeline; IPA/IP2 pipeline; MaxQuant pipeline; OpenMS pipeline; Protein identification; Protein quantification; Proteomics data processing; Scaffold pipeline; Sorcerer pipeline; The Central Proteomics Facilities Pipeline (CPFP); Trans proteomic pipeline

Mesh:

Substances:

Year:  2016        PMID: 27975218     DOI: 10.1007/978-3-319-41448-5_9

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  4 in total

1.  Comprehensive ADP-ribosylome analysis identifies tyrosine as an ADP-ribose acceptor site.

Authors:  Deena M Leslie Pedrioli; Mario Leutert; Vera Bilan; Kathrin Nowak; Kapila Gunasekera; Elena Ferrari; Ralph Imhof; Lars Malmström; Michael O Hottiger
Journal:  EMBO Rep       Date:  2018-06-28       Impact factor: 8.807

Review 2.  Rapid and robust MALDI-TOF MS techniques for microbial identification: a brief overview of their diverse applications.

Authors:  Kyoung-Soon Jang; Young Hwan Kim
Journal:  J Microbiol       Date:  2018-02-28       Impact factor: 3.422

3.  ISG15 governs mitochondrial function in macrophages following vaccinia virus infection.

Authors:  Sara Baldanta; Mercedes Fernández-Escobar; Rebeca Acín-Perez; Manuel Albert; Emilio Camafeita; Inmaculada Jorge; Jesús Vázquez; José Antonio Enríquez; Susana Guerra
Journal:  PLoS Pathog       Date:  2017-10-27       Impact factor: 6.823

4.  Harmonization of quality metrics and power calculation in multi-omic studies.

Authors:  Sonia Tarazona; Leandro Balzano-Nogueira; David Gómez-Cabrero; Andreas Schmidt; Axel Imhof; Thomas Hankemeier; Jesper Tegnér; Johan A Westerhuis; Ana Conesa
Journal:  Nat Commun       Date:  2020-06-18       Impact factor: 14.919

  4 in total

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