Literature DB >> 27975217

Top-Down Mass Spectrometry: Proteomics to Proteoforms.

Steven M Patrie1,2,3.   

Abstract

This chapter highlights many of the fundamental concepts and technologies in the field of top-down mass spectrometry (TDMS), and provides numerous examples of contributions that TD is making in biology, biophysics, and clinical investigations. TD workflows include variegated steps that may include non-specific or targeted preparative strategies, orthogonal liquid chromatography techniques, analyte ionization, mass analysis, tandem mass spectrometry (MS/MS) and informatics procedures. This diversity of experimental designs has evolved to manage the large dynamic range of protein expression and diverse physiochemical properties of proteins in proteome investigations, tackle proteoform microheterogeneity, as well as determine structure and composition of gas-phase proteins and protein assemblies.

Entities:  

Keywords:  Alternative splicing; Bottom-up; Charge reduction; Chromatography; Data-dependent; Data-independent; Electrospray ionization; FT-ICR; Fourier transform; Hydrogen/deuterium exchange; Informatics; Label-free quantitation; Mass spectrometry; Membrane proteins; Native MS; Orbitrap; Post-translational modifications; Protein; Proteoform; Proteomics; Quadrupole ion trap; Reversed-phase; Review; SILAC; SNPs; Supercharging; Tandem MS; Time-of-flight; Top-down

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Year:  2016        PMID: 27975217     DOI: 10.1007/978-3-319-41448-5_8

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  11 in total

1.  Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol.

Authors:  Hae-Min Park; Rosalba Satta; Roderick G Davis; Young Ah Goo; Richard D LeDuc; Ryan T Fellers; Joseph B Greer; Elena V Romanova; Stanislav S Rubakhin; Rex Tai; Paul M Thomas; Jonathan V Sweedler; Neil L Kelleher; Steven M Patrie; Amy W Lasek
Journal:  J Proteome Res       Date:  2019-10-02       Impact factor: 4.466

2.  The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins.

Authors:  Nicholas M Riley; Jacek W Sikora; Henrique S Seckler; Joseph B Greer; Ryan T Fellers; Richard D LeDuc; Michael S Westphall; Paul M Thomas; Neil L Kelleher; Joshua J Coon
Journal:  Anal Chem       Date:  2018-07-05       Impact factor: 6.986

3.  Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules.

Authors:  Jennifer S Brodbelt; Lindsay J Morrison; Inês Santos
Journal:  Chem Rev       Date:  2019-12-18       Impact factor: 60.622

4.  Proteomic studies of bone and skeletal health outcomes.

Authors:  Carrie M Nielson; Jon M Jacobs; Eric S Orwoll
Journal:  Bone       Date:  2019-04-04       Impact factor: 4.398

Review 5.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

6.  Continuous Elution Proteoform Identification of Myelin Basic Protein by Superficially Porous Reversed-Phase Liquid Chromatography and Fourier Transform Mass Spectrometry.

Authors:  Daniel A Plymire; Casey E Wing; Dana E Robinson; Steven M Patrie
Journal:  Anal Chem       Date:  2017-10-31       Impact factor: 6.986

7.  Utilizing Optimized Tools to Investigate PTM Crosstalk: Identifying Potential PTM Crosstalk of Acetylated Mitochondrial Proteins.

Authors:  Henrick Horita; Andy Law; Kim Middleton
Journal:  Proteomes       Date:  2018-05-22

Review 8.  Characterization of Contractile Proteins from Skeletal Muscle Using Gel-Based Top-Down Proteomics.

Authors:  Paul Dowling; Margit Zweyer; Dieter Swandulla; Kay Ohlendieck
Journal:  Proteomes       Date:  2019-06-20

Review 9.  Current Evidence for a Bidirectional Loop Between the Lysosome and Alpha-Synuclein Proteoforms.

Authors:  Norelle C Wildburger; Anna-Sophia Hartke; Alina Schidlitzki; Franziska Richter
Journal:  Front Cell Dev Biol       Date:  2020-11-17

Review 10.  The Challenge of Human Spermatozoa Proteome: A Systematic Review.

Authors:  Kambiz Gilany; Arash Minai-Tehrani; Mehdi Amini; Niloofar Agharezaee; Babak Arjmand
Journal:  J Reprod Infertil       Date:  2017 Jul-Sep
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