Literature DB >> 27973805

Substrate Sulfoxidation by an Iron(IV)-Oxo Complex: Benchmarking Computationally Calculated Barrier Heights to Experiment.

Fabián G Cantú Reinhard1, Abayomi S Faponle1, Sam P de Visser1.   

Abstract

High-valent metal-oxo oxidants are common reactive species in synthetic catalysts as well as heme and nonheme iron enzymes. In general, they efficiently react with substrates through oxygen atom transfer, and for a number of cases, experimental rate constants have been determined. However, because these rate constants are generally measured in a polar solution, it has been found difficult to find computational methodologies to reproduce experimental trends and reactivities. In this work, we present a detailed computational study into para-substituted thioanisole sulfoxidation by a nonheme iron(IV)-oxo complex. A range of density functional theory methods and basis sets has been tested for their suitability to describe the reaction mechanism and compared with experimentally obtained free energies of activation. It is found that the enthalpy of activation is reproduced well, but all methods overestimate the entropy of activation by about 50%, for which we recommend a correction factor. The effect of solvent and dispersion on the barrier heights is explored both at the single-point level and also through inclusion in geometry optimizations, and particularly, solvent is seen as highly beneficial to reproduce experimental free energies of activation. Interestingly, in general, experimental trends and Hammett plots are reproduced well with almost all methods and procedures, and only a systematic error seems to apply for these chemical systems. Very good agreement between experiment and theory is found for a number of different methods, including B3LYP and PBE0, and procedures that are highlighted in the paper.

Entities:  

Year:  2016        PMID: 27973805     DOI: 10.1021/acs.jpca.6b09765

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  14 in total

1.  Properties and reactivity of μ-nitrido-bridged dimetal porphyrinoid complexes: how does ruthenium compare to iron?

Authors:  M Qadri E Mubarak; Alexander B Sorokin; Sam P de Visser
Journal:  J Biol Inorg Chem       Date:  2019-09-27       Impact factor: 3.358

2.  Hydrogen Atom Abstraction by High-Valent Fe(OH) versus Mn(OH) Porphyrinoid Complexes: Mechanistic Insights from Experimental and Computational Studies.

Authors:  Jan Paulo T Zaragoza; Daniel C Cummins; M Qadri E Mubarak; Maxime A Siegler; Sam P de Visser; David P Goldberg
Journal:  Inorg Chem       Date:  2019-12-05       Impact factor: 5.165

3.  How Are Substrate Binding and Catalysis Affected by Mutating Glu127 and Arg161 in Prolyl-4-hydroxylase? A QM/MM and MD Study.

Authors:  Amy Timmins; Sam P de Visser
Journal:  Front Chem       Date:  2017-11-09       Impact factor: 5.221

4.  Nitrogen Reduction to Ammonia on a Biomimetic Mononuclear Iron Centre: Insights into the Nitrogenase Enzyme.

Authors:  Monika A Kaczmarek; Abheek Malhotra; G Alex Balan; Amy Timmins; Sam P de Visser
Journal:  Chemistry       Date:  2017-12-14       Impact factor: 5.236

5.  Quantum Mechanics/Molecular Mechanics Studies on the Relative Reactivities of Compound I and II in Cytochrome P450 Enzymes.

Authors:  Verònica Postils; Maud Saint-André; Amy Timmins; Xiao-Xi Li; Yong Wang; Josep M Luis; Miquel Solà; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2018-07-06       Impact factor: 5.923

6.  Prediction of Reduction Potentials of Copper Proteins with Continuum Electrostatics and Density Functional Theory.

Authors:  Nicholas J Fowler; Christopher F Blanford; Jim Warwicker; Sam P de Visser
Journal:  Chemistry       Date:  2017-09-21       Impact factor: 5.236

7.  Does Substrate Positioning Affect the Selectivity and Reactivity in the Hectochlorin Biosynthesis Halogenase?

Authors:  Amy Timmins; Nicholas J Fowler; Jim Warwicker; Grit D Straganz; Sam P de Visser
Journal:  Front Chem       Date:  2018-10-30       Impact factor: 5.221

8.  Product Distributions of Cytochrome P450 OleTJE with Phenyl-Substituted Fatty Acids: A Computational Study.

Authors:  Yen-Ting Lin; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2021-07-02       Impact factor: 5.923

9.  How Does Replacement of the Axial Histidine Ligand in Cytochrome c Peroxidase by Nδ-Methyl Histidine Affect Its Properties and Functions? A Computational Study.

Authors:  Calvin W Z Lee; M Qadri E Mubarak; Anthony P Green; Sam P de Visser
Journal:  Int J Mol Sci       Date:  2020-09-27       Impact factor: 5.923

10.  Proton-coupled electron transfer reactivities of electronically divergent heme superoxide intermediates: a kinetic, thermodynamic, and theoretical study.

Authors:  Pritam Mondal; Izumi Ishigami; Emilie F Gérard; Chaeeun Lim; Syun-Ru Yeh; Sam P de Visser; Gayan B Wijeratne
Journal:  Chem Sci       Date:  2021-05-27       Impact factor: 9.825

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