| Literature DB >> 27959912 |
Andrea J Hartlerode, Nicholas A Willis, Anbazhagan Rajendran, John P Manis, Ralph Scully.
Abstract
[This corrects the article DOI: 10.1371/journal.pgen.1006410.].Entities:
Year: 2016 PMID: 27959912 PMCID: PMC5154494 DOI: 10.1371/journal.pgen.1006509
Source DB: PubMed Journal: PLoS Genet ISSN: 1553-7390 Impact factor: 5.917
Fig 7MMBIR model of complex breakpoint shown in Fig 6B.
Strand separation occurs within the DNA of the second end of the break ~3.5 kb from the I-SceI site. One possible source depicted here is a stalled replication fork. The pale orange and blue arrows flanking the stalled fork represent the exposed ssDNA sequences that template the inversion (orange) and inversion-duplication (blue) sequences identified within the LTGC breakpoint (A) The displaced nascent strand product of LTGC (black) acquires a ≥21bp insertion (red; whether templated or untemplated is unknown). (B) Microhomology-mediated base-pairing between the 3’ end of the displaced nascent strand and ssDNA of the stalled replication fork. (C) The lagging strand template enables retrograde nascent strand extension (“MMBIR”), generating the inversion sequences as shown. (D) Displacement of the nascent strand. (E) Four base pair MH-mediated (Fig 6B) annealing of the 3’ end of the displaced nascent strand with the 5’ end of the duplicated region on the leading strand. Black arrowheads: sites of endonucleolytic cleavage that would enable completion of rearrangement by MMEJ-mediated rejoining. Alternatively, more extensive MMBIR copying could complete the rearrangement.