Literature DB >> 27935277

Structural Roles of Noncoding RNAs in the Heart of Enzymatic Complexes.

William J Martin1, Nicholas J Reiter1.   

Abstract

Over billions of years of evolution, nature has embraced proteins as the major workhorse molecules of the cell. However, nearly every aspect of metabolism is dependent upon how structured RNAs interact with proteins, ligands, and other nucleic acids. Key processes, including telomere maintenance, RNA processing, and protein synthesis, require large RNAs that assemble into elaborate three-dimensional shapes. These RNAs can (i) act as flexible scaffolds for protein subunits, (ii) participate directly in substrate recognition, and (iii) serve as catalytic components. Here, we juxtapose the near atomic level interactions of three ribonucleoprotein complexes: ribonuclease P (involved in 5' pre-tRNA processing), the spliceosome (responsible for pre-mRNA splicing), and telomerase (an RNA-directed DNA polymerase that extends the ends of chromosomes). The focus of this perspective is profiling the structural and dynamic roles of RNAs at the core of these enzymes, highlighting how large RNAs contribute to molecular recognition and catalysis.

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Year:  2016        PMID: 27935277      PMCID: PMC5742481          DOI: 10.1021/acs.biochem.6b01106

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  109 in total

1.  A catalytically active group II intron domain 5 can function in the U12-dependent spliceosome.

Authors:  Girish C Shukla; Richard A Padgett
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

2.  A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.

Authors:  John Hsieh; Kristin S Koutmou; David Rueda; Markos Koutmos; Nils G Walter; Carol A Fierke
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

3.  The 5' guanosine tracts of human telomerase RNA are recognized by the G-quadruplex binding domain of the RNA helicase DHX36 and function to increase RNA accumulation.

Authors:  Alec N Sexton; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2010-12-13       Impact factor: 4.272

4.  Identification of the universally conserved core of ribonuclease P RNA.

Authors:  J L Chen; N R Pace
Journal:  RNA       Date:  1997-06       Impact factor: 4.942

5.  Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR.

Authors:  Heike Blad; Nicholas J Reiter; Frits Abildgaard; John L Markley; Samuel E Butcher
Journal:  J Mol Biol       Date:  2005-09-02       Impact factor: 5.469

6.  Determination of the Specificity Landscape for Ribonuclease P Processing of Precursor tRNA 5' Leader Sequences.

Authors:  Courtney N Niland; Jing Zhao; Hsuan-Chun Lin; David R Anderson; Eckhard Jankowsky; Michael E Harris
Journal:  ACS Chem Biol       Date:  2016-06-23       Impact factor: 5.100

7.  Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP.

Authors:  Bruno Lemieux; Nancy Laterreur; Anna Perederina; Jean-François Noël; Marie-Line Dubois; Andrey S Krasilnikov; Raymund J Wellinger
Journal:  Cell       Date:  2016-05-05       Impact factor: 41.582

8.  An alternative telomerase RNA in Arabidopsis modulates enzyme activity in response to DNA damage.

Authors:  Catherine Cifuentes-Rojas; Andrew D L Nelson; Kara A Boltz; Kalpana Kannan; Xintao She; Dorothy E Shippen
Journal:  Genes Dev       Date:  2012-10-29       Impact factor: 11.361

Review 9.  Telomere and Telomerase Therapeutics in Cancer.

Authors:  Yucheng Xu; Amir Goldkorn
Journal:  Genes (Basel)       Date:  2016-05-26       Impact factor: 4.096

Review 10.  The spliceosome: disorder and dynamics defined.

Authors:  Weijun Chen; Melissa J Moore
Journal:  Curr Opin Struct Biol       Date:  2014-02-14       Impact factor: 6.809

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  3 in total

1.  Dissecting Monomer-Dimer Equilibrium of an RNase P Protein Provides Insight Into the Synergistic Flexibility of 5' Leader Pre-tRNA Recognition.

Authors:  Danyun Zeng; Ainur Abzhanova; Benjamin P Brown; Nicholas J Reiter
Journal:  Front Mol Biosci       Date:  2021-09-03

2.  NMR resonance assignments of RNase P protein from Thermotoga maritima.

Authors:  Danyun Zeng; Benjamin P Brown; Markus W Voehler; Sheng Cai; Nicholas J Reiter
Journal:  Biomol NMR Assign       Date:  2018-02-15       Impact factor: 0.746

3.  Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.

Authors:  Dana V Foss; Nicole T Schirle; Ian J MacRae; John Paul Pezacki
Journal:  FEBS Open Bio       Date:  2019-05-17       Impact factor: 2.693

  3 in total

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