Literature DB >> 27930807

Exploring FlyBase Data Using QuickSearch.

Steven J Marygold1, Giulia Antonazzo1, Helen Attrill1, Marta Costa1, Madeline A Crosby2, Gilberto Dos Santos2, Joshua L Goodman3, L Sian Gramates2, Beverley B Matthews2, Alix J Rey1, Jim Thurmond3.   

Abstract

FlyBase (flybase.org) is the primary online database of genetic, genomic, and functional information about Drosophila species, with a major focus on the model organism Drosophila melanogaster. The long and rich history of Drosophila research, combined with recent surges in genomic-scale and high-throughput technologies, mean that FlyBase now houses a huge quantity of data. Researchers need to be able to rapidly and intuitively query these data, and the QuickSearch tool has been designed to meet these needs. This tool is conveniently located on the FlyBase homepage and is organized into a series of simple tabbed interfaces that cover the major data and annotation classes within the database. This unit describes the functionality of all aspects of the QuickSearch tool. With this knowledge, FlyBase users will be equipped to take full advantage of all QuickSearch features and thereby gain improved access to data relevant to their research. © 2016 by John Wiley & Sons, Inc.
Copyright © 2016 John Wiley & Sons, Inc.

Entities:  

Keywords:  Drosophila melanogaster; FlyBase; QuickSearch; biological database; query tools

Mesh:

Year:  2016        PMID: 27930807      PMCID: PMC5152691          DOI: 10.1002/cpbi.19

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN: 1934-3396


  20 in total

1.  Phenotypic data in FlyBase.

Authors:  R Drysdale
Journal:  Brief Bioinform       Date:  2001-03       Impact factor: 11.622

2.  An integrative approach to ortholog prediction for disease-focused and other functional studies.

Authors:  Yanhui Hu; Ian Flockhart; Arunachalam Vinayagam; Clemens Bergwitz; Bonnie Berger; Norbert Perrimon; Stephanie E Mohr
Journal:  BMC Bioinformatics       Date:  2011-08-31       Impact factor: 3.169

3.  OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.

Authors:  Evgenia V Kriventseva; Fredrik Tegenfeldt; Tom J Petty; Robert M Waterhouse; Felipe A Simão; Igor A Pozdnyakov; Panagiotis Ioannidis; Evgeny M Zdobnov
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

4.  FlyBase: establishing a Gene Group resource for Drosophila melanogaster.

Authors:  Helen Attrill; Kathleen Falls; Joshua L Goodman; Gillian H Millburn; Giulia Antonazzo; Alix J Rey; Steven J Marygold
Journal:  Nucleic Acids Res       Date:  2015-10-13       Impact factor: 16.971

5.  AmiGO: online access to ontology and annotation data.

Authors:  Seth Carbon; Amelia Ireland; Christopher J Mungall; ShengQiang Shu; Brad Marshall; Suzanna Lewis
Journal:  Bioinformatics       Date:  2008-11-25       Impact factor: 6.937

6.  Gene Ontology Consortium: going forward.

Authors: 
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 19.160

7.  FlyBase 102--advanced approaches to interrogating FlyBase.

Authors:  Susan E St Pierre; Laura Ponting; Raymund Stefancsik; Peter McQuilton
Journal:  Nucleic Acids Res       Date:  2013-11-13       Impact factor: 16.971

8.  The Drosophila anatomy ontology.

Authors:  Marta Costa; Simon Reeve; Gary Grumbling; David Osumi-Sutherland
Journal:  J Biomed Semantics       Date:  2013-10-18

Review 9.  FlyBase portals to human disease research using Drosophila models.

Authors:  Gillian H Millburn; Madeline A Crosby; L Sian Gramates; Susan Tweedie
Journal:  Dis Model Mech       Date:  2016-03       Impact factor: 5.758

Review 10.  A review of the new HGNC gene family resource.

Authors:  Kristian A Gray; Ruth L Seal; Susan Tweedie; Mathew W Wright; Elspeth A Bruford
Journal:  Hum Genomics       Date:  2016-02-03       Impact factor: 4.639

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  2 in total

1.  Using FlyBase to Find Functionally Related Drosophila Genes.

Authors:  Alix J Rey; Helen Attrill; Steven J Marygold
Journal:  Methods Mol Biol       Date:  2018

2.  Fly Base: a guided tour of highlighted features.

Authors:  L Sian Gramates; Julie Agapite; Helen Attrill; Brian R Calvi; Madeline A Crosby; Gilberto Dos Santos; Joshua L Goodman; Damien Goutte-Gattat; Victoria K Jenkins; Thomas Kaufman; Aoife Larkin; Beverley B Matthews; Gillian Millburn; Victor B Strelets
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.402

  2 in total

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